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Collection of changes for the next schema release #93
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Made Collection_ID a list column
Chromosomal anomalies .janno columns
Curating institution .janno column
Co-authored-by: Stephan Schiffels <[email protected]>
Co-authored-by: Stephan Schiffels <[email protected]>
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This PR contains a number of changes for the Poseidon schema v3.0. See changelog.md for a summary. Pinging some core members and power-users, but anybody is invited to comment. @stschiff, @TCLamnidis, @AyGhal, @wolfgangaroo, @Mattists, @martynamolak |
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Looking at this from a bit of distance I now think there are some aspects we could/should still specify in this version, notably some details we previously discussed on an implementation level:
I'm also aware that there are more ideas about .janno columns we may want to add to the schema eventually, e.g. discussed in #97. But that requires good preparation and discussion. To move forward with this release now we should not open any can of worms here, imho. New columns, that were not mentioned in the review of the Poseidon paper, should be added later. |
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The allowed Source_Materials are "petrous;bone;tooth;soft;sediment;other".
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`LF` over `CRLF` line endings
`A-Za-z0-9_-.` for Poseidon_IDs and Group_Names
Co-authored-by: Stephan Schiffels <[email protected]>
New `_Note` column definition
… entities it signifies - derived from a paragraph in Supp. Text 8 of the Poseidon paper
better conceptual specification of the Poseidon_ID
…mbly + referenceGenomeAssemblyURL
This PR prepares the next major release of the Poseidon Schema, planned as version 3.0.0