preste-ai/Blood-Brain-Barrier
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Requirements:
1) Install Anaconda
2) Open a terminal
3) Clone repository
git clone https://github.com/preste-ai/BBB.git
4) In the terminal navigate to the project root folder
cd path/BBB
5) Create environment using Anaconda and activate it
conda create --name bbb --file spec-file.txt
conda activate bbb
Usage:
1) Paste the SMILES for molecules for which predictions to be made in the following file
data/predictions/input.csv
2) Insert the output to predict in the "target" from "predictions" section of parameters.json.
Three values of output are possible: "substrates", "inhibitorsA2", "inhibitorsB1"
3) Run script for getting predictions using following syntax:
python3 run_predictions.py
4) Find the predictions in the *.csv files of data/predictions/output directory