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Table of Contents

• Developer Setup

  • Prerequisites
  • Installation
  • Generate sample data
  • Running the web application
  • Contributing to guidescanpy

• Generating Data

  • Run Snakemake workflow
  • Downloading pre-generated data

• Running Guidescan in Docker

  • Prerequisites
  • Preparation
  • Generating Guidescan Data
  • Running Guidescan

• Project Structure

• Command Line Interface

  • Web
  • Decode
  • Generate Kmers
  • Initialize Database
  • Add Organism
  • Filter Tag
  • Add Tag