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# Copyright 2022 - 2026 The PyMC Labs Developers
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import hashlib
import json
import os
import re
import sys
import tempfile
from pathlib import Path
import arviz as az
import graphviz
import numpy as np
import pandas as pd
import pymc as pm
import pytest
import xarray as xr
from rich.table import Table
from pymc_marketing.data.idata.utils import idata_from_zarr
from pymc_marketing.hsgp_kwargs import HSGPKwargs
from pymc_marketing.model_builder import (
DifferentModelError,
ModelBuilder,
ModelIO,
RegressionModelBuilder,
create_sample_kwargs,
)
@pytest.fixture(scope="module")
def toy_X():
x = np.linspace(start=0, stop=1, num=100)
return pd.DataFrame({"input": x})
@pytest.fixture(scope="module")
def toy_y(toy_X):
rng = np.random.default_rng(42)
y = 5 * toy_X["input"] + 3
y = y + rng.normal(0, 1, size=len(toy_X))
y = pd.Series(y, name="different name than output")
return y
@pytest.fixture(scope="module")
def fitted_regression_model_instance(toy_X, toy_y, mock_pymc_sample):
sampler_config = {
"draws": 100,
"tune": 100,
"chains": 2,
"target_accept": 0.95,
}
model_config = {
"a": {"loc": 0, "scale": 10, "dims": ("numbers",)},
"b": {"loc": 0, "scale": 10},
"obs_error": 2,
}
model = RegressionModelBuilderTest(
model_config=model_config,
sampler_config=sampler_config,
test_parameter="test_parameter",
)
model.fit(
toy_X,
toy_y,
chains=1,
draws=100,
tune=100,
)
return model
@pytest.fixture(scope="module")
def not_fitted_regression_model_instance():
sampler_config = {"draws": 100, "tune": 100, "chains": 2, "target_accept": 0.95}
model_config = {
"a": {"loc": 0, "scale": 10, "dims": ("numbers",)},
"b": {"loc": 0, "scale": 10},
"obs_error": 2,
}
return RegressionModelBuilderTest(
model_config=model_config,
sampler_config=sampler_config,
test_parameter="test_paramter",
)
@pytest.fixture(scope="module")
def toy_data(toy_X, toy_y):
"""Create a combined dataset for DataRegressionModelBuilderTest."""
data = toy_X.copy()
data["output"] = toy_y
return data
@pytest.fixture(scope="module")
def fitted_base_model_instance(toy_data, mock_pymc_sample):
sampler_config = {
"draws": 100,
"tune": 100,
"chains": 2,
"target_accept": 0.95,
}
model_config = {
"mu_loc": 0,
"mu_scale": 1,
"sigma_scale": 1,
}
model = ModelBuilderTest(
model_config=model_config,
sampler_config=sampler_config,
test_parameter="test_parameter",
)
model.fit(
chains=1,
draws=100,
tune=100,
)
return model
class RegressionModelBuilderTest(RegressionModelBuilder):
"""Test class for RegressionModelBuilder with X and y data arguments."""
def __init__(self, model_config=None, sampler_config=None, test_parameter=None):
self.test_parameter = test_parameter
super().__init__(model_config=model_config, sampler_config=sampler_config)
_model_type = "test_model"
version = "0.1"
def build_model(self, X: pd.DataFrame, y: pd.Series):
coords = {"numbers": np.arange(len(X))}
with pm.Model(coords=coords) as self.model:
x = pm.Data("x", X["input"].values)
y_data = pm.Data("y_data", y)
# prior parameters
a_loc = self.model_config["a"]["loc"]
a_scale = self.model_config["a"]["scale"]
b_loc = self.model_config["b"]["loc"]
b_scale = self.model_config["b"]["scale"]
obs_error = self.model_config["obs_error"]
# priors
a = pm.Normal(
"a",
a_loc,
sigma=a_scale,
dims=self.model_config["a"]["dims"],
)
b = pm.Normal("b", b_loc, sigma=b_scale)
obs_error = pm.HalfNormal("σ_model_fmc", obs_error)
# observed data
pm.Normal("output", a + b * x, obs_error, shape=x.shape, observed=y_data)
def create_idata_attrs(self):
attrs = super().create_idata_attrs()
attrs["test_parameter"] = json.dumps(self.test_parameter)
return attrs
@property
def output_var(self):
return "output"
def _data_setter(self, X: pd.DataFrame, y: pd.Series | None = None):
with self.model:
pm.set_data({"x": X["input"].values})
if y is not None:
y = y.values if isinstance(y, pd.Series) else y
pm.set_data({"y_data": y})
@property
def _serializable_model_config(self):
return self.model_config
@property
def default_model_config(self) -> dict:
return {
"a": {"loc": 0, "scale": 10, "dims": ("numbers",)},
"b": {"loc": 0, "scale": 10},
"obs_error": 2,
}
@property
def default_sampler_config(self) -> dict:
return {
"draws": 1_000,
"tune": 1_000,
"chains": 3,
"target_accept": 0.95,
}
class ModelBuilderTest(ModelBuilder):
"""Test class for ModelBuilder base class."""
def __init__(self, model_config=None, sampler_config=None, test_parameter=None):
self.test_parameter = test_parameter
super().__init__(model_config=model_config, sampler_config=sampler_config)
_model_type = "base_test_model"
version = "0.1"
def build_model(self, **kwargs):
# This is a simple model for testing the ModelBuilder base class
with pm.Model() as self.model:
# Very simple model to avoid compilation issues
pm.Normal("test", 0, 1)
def build_from_idata(self, idata: az.InferenceData) -> None:
self.build_model()
def create_idata_attrs(self):
attrs = super().create_idata_attrs()
attrs["test_parameter"] = json.dumps(self.test_parameter)
return attrs
@property
def _serializable_model_config(self):
return self.model_config
@property
def default_model_config(self) -> dict:
return {"mu_loc": 0, "mu_scale": 1, "sigma_scale": 1}
@property
def default_sampler_config(self) -> dict:
return {
"draws": 1_000,
"tune": 1_000,
"chains": 3,
"target_accept": 0.95,
}
def fit(self, **kwargs):
"""Override fit method for ModelBuilderTest."""
if not hasattr(self, "model"):
self.build_model()
sampler_kwargs = create_sample_kwargs(
self.sampler_config,
kwargs.get("progressbar"),
kwargs.get("random_seed"),
**kwargs,
)
with self.model:
idata = pm.sample(**sampler_kwargs)
if self.idata:
self.idata = self.idata.copy()
self.idata.extend(idata, join="right")
else:
self.idata = idata
self.set_idata_attrs(self.idata)
return self.idata
@pytest.mark.parametrize(
"model_class,expected_type,test_config",
[
(RegressionModelBuilderTest, "test_model", {"obs_error": 3}),
(ModelBuilderTest, "base_test_model", {"obs_error": 3}),
(RegressionModelBuilderTest, "test_model", {"mu_loc": 5}),
],
)
def test_model_configuration(model_class, expected_type, test_config):
"""Test model and sampler configuration for all model types."""
default = model_class()
assert default.model_config == default.default_model_config
assert default.sampler_config == default.default_sampler_config
assert default._model_type == expected_type
nondefault = model_class(model_config=test_config, sampler_config={"draws": 42})
assert nondefault.model_config != nondefault.default_model_config
assert nondefault.sampler_config != nondefault.default_sampler_config
assert nondefault.model_config == default.model_config | test_config
assert nondefault.sampler_config == default.sampler_config | {"draws": 42}
def test_model_config_warns_on_unused_keys():
"""Unknown model_config keys should warn so typos are not silently ignored."""
with pytest.warns(UserWarning, match="not used by the model"):
ModelBuilderTest(model_config={"mu_loc": 5, "typo_key": 1})
def test_model_config_no_warning_for_valid_keys(recwarn):
"""No unused-key warning is raised when every key is a valid default key."""
ModelBuilderTest(model_config={"mu_loc": 5})
assert not [w for w in recwarn if "not used by the model" in str(w.message)]
@pytest.mark.parametrize(
"test_case,model_class,method,expected_error,args",
[
(
"save_without_fit",
RegressionModelBuilderTest,
"save",
"The model hasn't been fit yet",
["test"],
),
(
"fit_result_error",
RegressionModelBuilderTest,
"fit_result",
"The model hasn't been fit yet",
[],
),
(
"graphviz_before_build",
RegressionModelBuilderTest,
"graphviz",
"The model hasn't been built yet",
[],
),
(
"table_before_build",
RegressionModelBuilderTest,
"table",
"The model hasn't been built yet",
[],
),
],
)
def test_error_handling(test_case, model_class, method, expected_error, args):
"""Test various error conditions."""
model = model_class()
with pytest.raises(RuntimeError, match=expected_error):
getattr(model, method)(*args)
def test_model_io_comprehensive():
"""Comprehensive test of ModelIO mixin functionality."""
# Test with different model types
regression_model = RegressionModelBuilderTest(test_parameter="test_parameter")
base_model = ModelBuilderTest(test_parameter="test_parameter")
# Test that all have unique IDs
ids = [regression_model.id, base_model.id]
assert len(set(ids)) == 2
# Test that all have proper model types and versions
assert regression_model._model_type == "test_model"
assert base_model._model_type == "base_test_model"
assert regression_model.version == "0.1"
assert base_model.version == "0.1"
# Test attrs creation
attrs = regression_model.create_idata_attrs()
required_keys = {"id", "model_type", "version", "sampler_config", "model_config"}
assert all(key in attrs for key in required_keys)
assert attrs["model_type"] == "test_model"
assert attrs["version"] == "0.1"
assert attrs["test_parameter"] == '"test_parameter"'
# Test set_idata_attrs
with pm.Model() as simple_model:
pm.Normal("test", 0, 1)
fake_idata = pm.sample_prior_predictive(
draws=10, model=simple_model, random_seed=1234
)
fake_idata.add_groups(dict(posterior=fake_idata.prior))
result_idata = regression_model.set_idata_attrs(fake_idata)
assert result_idata.attrs["id"] == regression_model.id
assert result_idata.attrs["model_type"] == regression_model._model_type
assert result_idata.attrs["version"] == regression_model.version
# Test error when no idata provided
with pytest.raises(RuntimeError, match=r"No idata provided to set attrs on"):
regression_model.set_idata_attrs(None)
@pytest.mark.parametrize(
"method_name",
["sample_prior_predictive", "sample_posterior_predictive", "predict_posterior"],
)
def test_pred_alias_no_longer_accepted(
fitted_regression_model_instance, toy_X, method_name
):
"""X_pred used to be a deprecated alias for X. After deprecation removal,
X is a required positional argument, so passing only X_pred raises TypeError.
"""
method = getattr(fitted_regression_model_instance, method_name)
with pytest.raises(TypeError, match=r"missing 1 required positional argument: 'X'"):
method(X_pred=toy_X)
def test_data_validation_comprehensive():
"""Comprehensive test of data validation in RegressionModelBuilder."""
model = RegressionModelBuilderTest()
# Test _validate_data method
X = np.array([[1, 2], [3, 4]])
y = np.array([1, 2])
# Test with X and y
X_valid, y_valid = model._validate_data(X, y)
assert isinstance(X_valid, np.ndarray)
assert isinstance(y_valid, np.ndarray)
# Test with only X
X_valid_only = model._validate_data(X)
assert isinstance(X_valid_only, np.ndarray)
# Test with pandas DataFrame and Series
X_df = pd.DataFrame(X, columns=["a", "b"])
y_series = pd.Series(y)
X_valid_df, y_valid_series = model._validate_data(X_df, y_series)
assert isinstance(X_valid_df, np.ndarray)
assert isinstance(y_valid_series, np.ndarray)
# Test output variable conflict
X_with_output = pd.DataFrame({"input": [1, 2, 3]})
X_with_output["output"] = pd.Series([1, 2, 3])
with pytest.raises(ValueError, match=r"X includes a column named 'output'"):
model.fit(X_with_output, pd.Series([1, 2, 3]))
def test_graphviz_and_requires_model():
"""Test graphviz functionality and requires_model decorator."""
model = RegressionModelBuilderTest()
# Test that graphviz and table fail before model is built
with pytest.raises(RuntimeError, match=r"The model hasn't been built yet"):
model.graphviz()
with pytest.raises(RuntimeError, match=r"The model hasn't been built yet"):
model.table()
# Test that they work after model is built
model.build_model(pd.DataFrame({"input": [1, 2, 3]}), pd.Series([1, 2, 3]))
assert isinstance(model.graphviz(), graphviz.graphs.Digraph)
assert isinstance(model.table(), Table)
def test_model_config_formatting_comprehensive():
"""Comprehensive test of model config formatting."""
model = RegressionModelBuilderTest()
# Test with empty config
empty_config = {}
formatted = model._model_config_formatting(empty_config)
assert formatted == {}
# Test with nested dicts but no lists
simple_config = {"a": {"b": "c"}}
formatted = model._model_config_formatting(simple_config)
assert formatted == simple_config
# Test with mixed types (original test)
model_config = {
"a": {
"loc": [0, 0],
"scale": 10,
"dims": [
"x",
],
},
}
converted_model_config = model._model_config_formatting(model_config)
np.testing.assert_equal(converted_model_config["a"]["dims"], ("x",))
np.testing.assert_equal(converted_model_config["a"]["loc"], np.array([0, 0]))
# Test with mixed types (edge cases)
mixed_config = {"a": {"dims": ["x", "y"], "loc": [1, 2], "scale": 10}}
formatted = model._model_config_formatting(mixed_config)
assert formatted["a"]["dims"] == ("x", "y")
assert isinstance(formatted["a"]["loc"], np.ndarray)
assert formatted["a"]["scale"] == 10
def test_idata_accessors_comprehensive():
"""Comprehensive test of idata accessor properties."""
model = RegressionModelBuilderTest()
# Test that accessors fail when no idata is available
with pytest.raises(RuntimeError, match=r"The model hasn't been fit yet"):
model.posterior
with pytest.raises(RuntimeError, match=r"The model hasn't been sampled yet"):
model.prior
with pytest.raises(RuntimeError, match=r"The model hasn't been sampled yet"):
model.prior_predictive
with pytest.raises(RuntimeError, match=r"The model hasn't been fit yet"):
model.posterior_predictive
with pytest.raises(
RuntimeError, match="Call the 'sample_posterior_predictive' method"
):
model.predictions
# Test fit_result accessor
with pytest.raises(RuntimeError, match=r"The model hasn't been fit yet"):
model.fit_result
def test_save_input_params(fitted_regression_model_instance):
assert (
fitted_regression_model_instance.idata.attrs["test_parameter"]
== '"test_parameter"'
)
def test_has_pymc_marketing_version(fitted_regression_model_instance):
assert "pymc_marketing_version" in fitted_regression_model_instance.posterior.attrs
def test_base_model_save_load(fitted_base_model_instance):
"""Test save/load functionality for BaseRegressionModelBuilderTest."""
temp = tempfile.NamedTemporaryFile(mode="w", encoding="utf-8", delete=False)
fitted_base_model_instance.save(temp.name)
test_builder2 = ModelBuilderTest.load(temp.name)
assert fitted_base_model_instance.idata.groups() == test_builder2.idata.groups()
assert fitted_base_model_instance.id == test_builder2.id
assert fitted_base_model_instance.model_config == test_builder2.model_config
assert fitted_base_model_instance.sampler_config == test_builder2.sampler_config
temp.close()
def test_initial_build_and_fit(
fitted_regression_model_instance, check_idata=True
) -> RegressionModelBuilder:
if check_idata:
assert fitted_regression_model_instance.idata is not None
assert "posterior" in fitted_regression_model_instance.idata.groups()
def test_save_with_kwargs(fitted_regression_model_instance):
"""Test that kwargs are properly passed to to_netcdf"""
import unittest.mock as mock
with mock.patch.object(
fitted_regression_model_instance.idata, "to_netcdf"
) as mock_to_netcdf:
temp = tempfile.NamedTemporaryFile(mode="w", encoding="utf-8", delete=False)
# Test with kwargs supported by InferenceData.to_netcdf()
kwargs = {"engine": "netcdf4", "groups": ["posterior", "log_likelihood"]}
fitted_regression_model_instance.save(temp.name, **kwargs)
# Verify to_netcdf was called with the correct arguments
mock_to_netcdf.assert_called_once_with(temp.name, **kwargs)
temp.close()
@pytest.mark.parametrize("path_factory", [str, Path], ids=["str", "path"])
@pytest.mark.parametrize("suffix", [".nc", ".zarr"], ids=["netcdf", "zarr"])
def test_save_with_kwargs_integration(
fitted_regression_model_instance, tmp_path, path_factory, suffix
):
"""Test save function with actual kwargs (integration test)"""
file_path = tmp_path / f"model_results{suffix}"
path_arg = path_factory(file_path)
# Test with specific groups - this tests that kwargs are passed through
fitted_regression_model_instance.save(path_arg, groups=["posterior"])
# Verify file was created successfully
assert file_path.exists()
# Verify we can read the file and it contains the expected groups
if suffix == ".zarr":
loaded_idata = idata_from_zarr(path_arg)
else:
loaded_idata = az.from_netcdf(str(file_path))
assert loaded_idata is not None
assert "posterior" in loaded_idata.groups()
# Should only have posterior since we specified groups=["posterior"]
assert "fit_data" not in loaded_idata.groups()
def test_save_kwargs_backward_compatibility(fitted_regression_model_instance):
"""Test that save function still works without kwargs (backward compatibility)"""
temp = tempfile.NamedTemporaryFile(mode="w", encoding="utf-8", delete=False)
temp_path = temp.name
temp.close()
try:
# Test without any kwargs (original behavior)
fitted_regression_model_instance.save(temp_path)
# Verify file was created and can be loaded
assert os.path.exists(temp_path)
loaded_model = RegressionModelBuilderTest.load(temp_path)
assert loaded_model.idata is not None
assert "posterior" in loaded_model.idata.groups()
finally:
# Clean up
if os.path.exists(temp_path):
os.unlink(temp_path)
def test_empty_sampler_config_fit(toy_X, toy_y, mock_pymc_sample):
sampler_config = {}
model_builder = RegressionModelBuilderTest(sampler_config=sampler_config)
model_builder.idata = model_builder.fit(
X=toy_X, y=toy_y, chains=1, draws=100, tune=100
)
assert model_builder.idata is not None
assert "posterior" in model_builder.idata.groups()
def test_fit(fitted_regression_model_instance):
rng = np.random.default_rng(42)
assert fitted_regression_model_instance.idata is not None
assert "posterior" in fitted_regression_model_instance.idata.groups()
assert fitted_regression_model_instance.idata.posterior.sizes["draw"] == 100
prediction_data = pd.DataFrame({"input": rng.uniform(low=0, high=1, size=100)})
fitted_regression_model_instance.predict(prediction_data)
post_pred = fitted_regression_model_instance.sample_posterior_predictive(
prediction_data, extend_idata=True, combined=True
)
assert (
post_pred[fitted_regression_model_instance.output_var].shape[0]
== prediction_data.input.shape[0]
)
def test_fit_no_t(toy_X, mock_pymc_sample):
model_builder = RegressionModelBuilderTest()
model_builder.idata = model_builder.fit(X=toy_X, chains=1, draws=100, tune=100)
assert model_builder.model is not None
assert model_builder.idata is not None
assert "posterior" in model_builder.idata.groups()
def test_set_fit_result(toy_X, toy_y):
model = RegressionModelBuilderTest()
model.build_model(X=toy_X, y=toy_y)
model.idata = None
fake_fit = pm.sample_prior_predictive(draws=50, model=model.model, random_seed=1234)
fake_fit.add_groups(dict(posterior=fake_fit.prior))
model.fit_result = fake_fit
with pytest.warns(UserWarning, match="Overriding pre-existing fit_result"):
model.fit_result = fake_fit
model.idata = None
model.fit_result = fake_fit
@pytest.mark.skipif(
sys.platform == "win32",
reason="Permissions for temp files not granted on windows CI.",
)
def test_predict(fitted_regression_model_instance):
rng = np.random.default_rng(42)
x_pred = rng.uniform(low=0, high=1, size=100)
prediction_data = pd.DataFrame({"input": x_pred})
pred = fitted_regression_model_instance.predict(prediction_data)
# Perform elementwise comparison using numpy
assert isinstance(pred, np.ndarray)
assert len(pred) > 0
@pytest.mark.parametrize("combined", [True, False])
def test_sample_posterior_predictive(fitted_regression_model_instance, combined):
rng = np.random.default_rng(42)
n_pred = 100
x_pred = rng.uniform(low=0, high=1, size=n_pred)
prediction_data = pd.DataFrame({"input": x_pred})
pred = fitted_regression_model_instance.sample_posterior_predictive(
prediction_data, combined=combined, extend_idata=True
)
chains = fitted_regression_model_instance.idata.posterior.sizes["chain"]
draws = fitted_regression_model_instance.idata.posterior.sizes["draw"]
expected_shape = (n_pred, chains * draws) if combined else (chains, draws, n_pred)
assert pred[fitted_regression_model_instance.output_var].shape == expected_shape
assert np.issubdtype(
pred[fitted_regression_model_instance.output_var].dtype, np.floating
)
def test_id():
model_builder = RegressionModelBuilderTest()
# Model ID now uses JSON serialization for deterministic hashing
config_json = json.dumps(model_builder._serializable_model_config, sort_keys=True)
expected_id = hashlib.sha256(
config_json.encode()
+ model_builder.version.encode()
+ model_builder._model_type.encode()
).hexdigest()[:16]
assert model_builder.id == expected_id
@pytest.mark.parametrize("name", ["prior_predictive", "posterior_predictive"])
def test_sample_xxx_predictive_keeps_second(
fitted_regression_model_instance, toy_X, name: str
) -> None:
rng = np.random.default_rng(42)
method_name = f"sample_{name}"
method = getattr(fitted_regression_model_instance, method_name)
X_pred = toy_X
kwargs = {
"X": X_pred,
"combined": False,
"extend_idata": True,
"random_seed": rng,
}
first_sample = method(**kwargs)
second_sample = method(**kwargs)
with pytest.raises(AssertionError):
xr.testing.assert_allclose(first_sample, second_sample)
sample = getattr(fitted_regression_model_instance.idata, name)
xr.testing.assert_allclose(sample, second_sample)
def test_prediction_kwarg(fitted_regression_model_instance, toy_X):
result = fitted_regression_model_instance.sample_posterior_predictive(
toy_X,
extend_idata=True,
predictions=True,
)
assert "predictions" in fitted_regression_model_instance.idata
assert "predictions_constant_data" in fitted_regression_model_instance.idata
assert isinstance(result, xr.Dataset)
@pytest.fixture(scope="module")
def model_with_prior_predictive(toy_X) -> RegressionModelBuilderTest:
model = RegressionModelBuilderTest()
model.sample_prior_predictive(toy_X)
return model
def test_sample_prior_predictive_groups(model_with_prior_predictive):
assert "prior" in model_with_prior_predictive.idata
assert "prior_predictive" in model_with_prior_predictive.idata
def test_sample_prior_predictive_has_pymc_marketing_version(
model_with_prior_predictive,
):
assert "pymc_marketing_version" in model_with_prior_predictive.prior.attrs
assert (
"pymc_marketing_version" in model_with_prior_predictive.prior_predictive.attrs
)
def test_fit_after_prior_keeps_prior(
model_with_prior_predictive,
toy_X,
toy_y,
mock_pymc_sample,
):
model_with_prior_predictive.fit(X=toy_X, y=toy_y, chains=1, draws=100, tune=100)
assert "prior" in model_with_prior_predictive.idata
assert "prior_predictive" in model_with_prior_predictive.idata
def test_second_fit(toy_X, toy_y, mock_pymc_sample):
model = RegressionModelBuilderTest()
model.fit(X=toy_X, y=toy_y, chains=1, draws=100, tune=100)
assert "posterior" in model.idata
id_before = id(model.idata)
assert "fit_data" in model.idata
model.fit(X=toy_X, y=toy_y, chains=1, draws=100, tune=100)
id_after = id(model.idata)
assert id_before != id_after
class InsufficientModel(RegressionModelBuilder):
def __init__(
self, model_config=None, sampler_config=None, new_parameter=None
) -> None:
super().__init__(model_config=model_config, sampler_config=sampler_config)
self.new_parameter = new_parameter
def build_model(self, X: pd.DataFrame, y: pd.Series, model_config=None) -> None:
with pm.Model() as self.model:
intercept = pm.Normal("intercept")
sigma = pm.HalfNormal("sigma")
pm.Normal("output", mu=intercept, sigma=sigma, observed=y)
@property
def output_var(self) -> str:
return "output"
@property
def default_model_config(self) -> dict:
return {}
@property
def default_sampler_config(self) -> dict:
return {}
def _generate_and_preprocess_model_data(
self,
X,
y,
) -> None:
pass
def _serializable_model_config(self) -> dict[str, int | float | dict]:
return {}
def _data_setter(
self,
X,
y,
) -> None:
pass
def test_insufficient_attrs() -> None:
model = InsufficientModel()
X_pred = [1, 2, 3]
match = r"__init__ has parameters that are not in the attrs"
with pytest.raises(ValueError, match=match):
model.sample_prior_predictive(X=X_pred)
def test_abstract_methods():
"""Test that abstract methods are properly enforced."""
# Test that we can't instantiate ModelBuilder directly
with pytest.raises(TypeError):
ModelBuilder(data=None)
# Test that we can't instantiate RegressionModelBuilder directly
with pytest.raises(TypeError):
RegressionModelBuilder()
def test_incorrect_set_idata_attrs_override() -> None:
class IncorrectSetAttrs(InsufficientModel):
def create_idata_attrs(self) -> dict:
return {"new_parameter": self.new_parameter}
model = IncorrectSetAttrs()
X_pred = [1, 2, 3]
match = r"Missing required keys in attrs"
with pytest.raises(ValueError, match=match):
model.sample_prior_predictive(X=X_pred)
@pytest.mark.parametrize(
"sampler_config, fit_kwargs, expected",
[
(
{},
{
"progressbar": None,
"random_seed": None,
},
{
"progressbar": True,
},
),
(
{
"random_seed": 52,
"progressbar": False,
},
{
"progressbar": None,
"random_seed": None,
},
{
"progressbar": False,
"random_seed": 52,
},
),
(
{
"random_seed": 52,
"progressbar": True,
},
{
"progressbar": False,
"random_seed": 42,
},
{
"progressbar": False,
"random_seed": 42,
},
),
],
ids=[
"no_sampler_config/defaults",
"use_sampler_config",
"override_sampler_config",
],
)
def test_create_sample_kwargs(sampler_config, fit_kwargs, expected) -> None:
sampler_config_before = sampler_config.copy()
assert create_sample_kwargs(sampler_config, **fit_kwargs) == expected
# Doesn't override
assert sampler_config_before == sampler_config
def create_int_seed():
return 42
def create_rng_seed():
return np.random.default_rng(42)
@pytest.mark.parametrize(
"create_random_seed",
[
create_int_seed,
create_rng_seed,
],
ids=["int", "rng"],
)
def test_fit_random_seed_reproducibility(toy_X, toy_y, create_random_seed) -> None:
sampler_config = {
"chains": 1,
"draws": 10,
"tune": 5,
}
model = RegressionModelBuilderTest(sampler_config=sampler_config)
idata = model.fit(toy_X, toy_y, random_seed=create_random_seed())
idata2 = model.fit(toy_X, toy_y, random_seed=create_random_seed())
assert idata.posterior.equals(idata2.posterior)
sizes = idata.posterior.sizes
assert sizes["chain"] == 1
assert sizes["draw"] == 10
def test_fit_sampler_config_seed_reproducibility(toy_X, toy_y) -> None:
sampler_config = {
"chains": 1,
"draws": 10,
"tune": 5,
"random_seed": 42,
}
model = RegressionModelBuilderTest(sampler_config=sampler_config)
idata = model.fit(toy_X, toy_y)
idata2 = model.fit(toy_X, toy_y)
assert idata.posterior.equals(idata2.posterior)
def test_fit_sampler_config_with_rng(toy_X, toy_y, mock_pymc_sample) -> None:
sampler_config = {
"chains": 1,
"draws": 10,
"tune": 5,
"random_seed": np.random.default_rng(42),
}
model = RegressionModelBuilderTest(sampler_config=sampler_config)
idata = model.fit(toy_X, toy_y)
assert isinstance(idata, az.InferenceData)
def test_unmatched_index(toy_X, toy_y) -> None:
model = RegressionModelBuilderTest()
toy_X = toy_X.copy()
toy_X.index = toy_X.index + 1
match = r"Index of X and y must match"
with pytest.raises(ValueError, match=match):