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pyranges slow on many chromosomes. Use chromsweep algorithm?

Status: Open.

#44 In pyranges/pyranges_1.x;

· endrebak opened on Dec 25, 2024

Why is match_by not called by?

Status: Open.

#42 In pyranges/pyranges_1.x;

· endrebak opened on Dec 23, 2024

E ModuleNotFoundError: No module named 'pkg_resources'

Status: Open.

#41 In pyranges/pyranges_1.x;

· endrebak opened on Dec 20, 2024

"Chromosome" and "Strand" columns become "object" dtype instead of "category" after .merge_overlaps()

Status: Open.

#37 In pyranges/pyranges_1.x;

· jeanmonet opened on Jul 5, 2024

action check is broken

Status: Open.

#35 In pyranges/pyranges_1.x;

· marco-mariotti opened on Jun 20, 2024

optional arg to get_sequence and get_transcript_sequence

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In pyranges/pyranges_1.x;

· marco-mariotti opened on Jun 12, 2024

boundaries is slow

enhancementNew feature or requestNew feature or request

Status: Open.

#32 In pyranges/pyranges_1.x;

· marco-mariotti opened on Jun 10, 2024