Sf fixes 3

[srmnitc]

Final part of the fixes for SF

[srmnitc]

@aazocar update of the ontologies are needed for this work.

[codecov]

Codecov Report

Attention: Patch coverage is 23.07692% with 30 lines in your changes missing coverage. Please review.

Project coverage is 65.05%. Comparing base (22bc11c) to head (8229ceb).
Report is 22 commits behind head on revise_for_use_cases.

Files with missing lines	Patch %	Lines
atomrdf/graph.py	25.00%	15 Missing ⚠️
atomrdf/sample.py	14.28%	12 Missing ⚠️
atomrdf/workflow/pyiron/murnaghan.py	0.00%	2 Missing ⚠️
atomrdf/workflow/workflow.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@                   Coverage Diff                    @@
##           revise_for_use_cases     #177      +/-   ##
========================================================
+ Coverage                 64.97%   65.05%   +0.08%     
========================================================
  Files                        25       25              
  Lines                      3837     3958     +121     
========================================================
+ Hits                       2493     2575      +82     
- Misses                     1344     1383      +39     

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