Revise for use cases

[srmnitc]

This pull request includes several updates to the atomrdf project, focusing on version updates, new methods, and bug fixes. The most important changes include version updates, the addition of a new method for adding simulation outputs, and various bug fixes in multiple files.

Version Updates:

• Updated the version from 0.10.1 to 0.10.2 in .bumpversion.cfg, CITATION.cff, and setup.py files. [1] [2] [3]

New Methods:

• Added a new method add_output_of_simulation to the atomrdf/graph.py file to create a new output of simulation in the graph.

Bug Fixes:

• Fixed the base quantity assignment in the add_calculated_quantity method in atomrdf/graph.py.
• Corrected the ontology terms in the _add_simulation_cell method in atomrdf/structure.py. [1] [2]
• Fixed the property assignment in the _add_outputs method in atomrdf/workflow/workflow.py.

Enhancements:

• Added a __getitem__ method to the Property class in atomrdf/sample.py to make the property subscriptable.
• Added a method update_physical_quantity to update the physical quantity of a node in atomrdf/sample.py.

These changes improve the functionality and maintainability of the atomrdf project.

[codecov]

Codecov Report

Attention: Patch coverage is 21.05263% with 30 lines in your changes missing coverage. Please review.

Project coverage is 65.05%. Comparing base (ac56123) to head (ea6d3c8).

Files with missing lines	Patch %	Lines
atomrdf/graph.py	25.00%	15 Missing ⚠️
atomrdf/sample.py	14.28%	12 Missing ⚠️
atomrdf/workflow/pyiron/murnaghan.py	0.00%	2 Missing ⚠️
atomrdf/workflow/workflow.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #178      +/-   ##
==========================================
- Coverage   65.49%   65.05%   -0.44%     
==========================================
  Files          25       25              
  Lines        3924     3958      +34     
==========================================
+ Hits         2570     2575       +5     
- Misses       1354     1383      +29     

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