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Merged
f-utro merged 39 commits into from
Sep 4, 2026
Merged

Migrate/authored #9

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c5f7b93
Phase 1: fix train/test contamination, embedding crashes, and PQK cac…
aritra90 Aug 28, 2026
eade519
Phase 2: packaging and dependency hygiene
aritra90 Aug 28, 2026
78d8f27
Phase 3: port the QuVINE app behind an optional [quvine] extra
aritra90 Aug 28, 2026
8982c32
Phase 4: make QuVINE a first-class embedding
aritra90 Aug 28, 2026
89d72f3
Recover the QuVINE data subpackage that was never committed
aritra90 Aug 28, 2026
c294deb
Phase 5: error messages, exception handling, boundary validation
aritra90 Aug 29, 2026
1b66b44
Phase 6: plotting hygiene
aritra90 Aug 29, 2026
251217b
Phase 7: notebooks, tutorial fixtures, and a single fixture resolver
aritra90 Aug 29, 2026
d09280a
Phase 8: fix the Sphinx build, publish the site from CI, document the…
aritra90 Aug 29, 2026
6b35b9f
Phase 9: an integration test tier, and the defects it found
aritra90 Aug 29, 2026
aa4b293
Phase 10: prove the extra is optional in CI, and drop the stale lock …
aritra90 Aug 29, 2026
c4d5aba
docs: fix seven defects a real Sphinx build exposed, and guard them
aritra90 Aug 29, 2026
9cc003b
Seed the estimators too, not just the split
aritra90 Aug 29, 2026
c811298
Make a broken import fail the suite instead of switching it off
aritra90 Aug 30, 2026
65283a8
Two defects that made the QProfiler tutorial unrunnable
aritra90 Aug 30, 2026
90e0839
Make the docs build warning-free, and make a warning fail it
aritra90 Aug 30, 2026
99ba861
Make the built distributions depend on the commit, not the builder
aritra90 Aug 31, 2026
0fde74d
Let QSage read its own documented input, and be predicted from
aritra90 Aug 31, 2026
22accea
Validate the QProfiler config before logging from it
aritra90 Aug 31, 2026
9f127ff
Execute the QuVINE T-vs-monocyte tutorial
aritra90 Aug 31, 2026
9d4cdff
Stop a stale SOURCES.txt from shipping 231 untracked files
aritra90 Aug 31, 2026
c2753f0
Stop torch's OpenMP runtime from segfaulting every XGBoost fit
aritra90 Aug 31, 2026
f12fe90
Let grid search tune a subset of a model's hyperparameters
aritra90 Aug 31, 2026
b500b1c
Make the QPL tutorial runnable, and its conclusions real
aritra90 Aug 31, 2026
c01c4c6
Execute the QuVINE CD4-vs-CD8 tutorial, and drop a false xfail reason
aritra90 Aug 31, 2026
422077d
Execute the 2x2 quadrant tutorial end to end
aritra90 Aug 31, 2026
3f370ed
Make example_qprofiler.ipynb runnable and unify its two config copies
aritra90 Aug 31, 2026
7cc6e5a
Restore the inline figures stripped by MPLBACKEND=Agg
aritra90 Aug 31, 2026
670d0bf
Fix the PQK data map, which could not build any feature map
aritra90 Aug 31, 2026
d24f538
Complete the Quantum Ensemble tutorial, and make its XGBoost arm run
aritra90 Aug 31, 2026
0052112
Stop labelling an empirical score gap "quantum advantage" in the tuto…
aritra90 Aug 31, 2026
7b050c6
PQK - OV: report F1 instead of accuracy, and fix a mangled separator
aritra90 Aug 31, 2026
ba0c59a
PQK - OV: stop refitting 1,260 duplicate models in the SVM grid
aritra90 Aug 31, 2026
94f957f
Commit executed PQK - OV outputs; ignore its run artifacts
aritra90 Sep 1, 2026
6bc3bf4
Stop example_quvine.ipynb from segfaulting its own kernel
aritra90 Sep 3, 2026
f5129b2
Stop a stale dir_home from shadowing the caller's own checkout
aritra90 Sep 3, 2026
a768f46
Scrub absolute local paths out of committed notebook outputs
aritra90 Sep 3, 2026
23f7fdc
docs: publish the two remaining QuVINE tutorials
aritra90 Sep 3, 2026
a887d4b
Merge branch 'main' into migrate/authored
f-utro Sep 4, 2026
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2 changes: 2 additions & 0 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -64,8 +64,10 @@ most method names resolving and a few raising at call time. Without it,
`import qbiocode` and all classical embeddings still work — only the
`quvine_*` names raise, with a message naming the missing module and the exact
install command. See

[Installation](https://qiskit-community.github.io/QBioCode/installation.html) for details.


</details>

#### Install with Conda
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