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chore: adopt cookiecutter-scverse template v0.7.0 updates#61

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Marius1311 merged 1 commit intomainfrom
chore/template-update-v0.7.0
Jan 16, 2026
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chore: adopt cookiecutter-scverse template v0.7.0 updates#61
Marius1311 merged 1 commit intomainfrom
chore/template-update-v0.7.0

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@Marius1311 Marius1311 commented Jan 16, 2026

Manually adopts relevant changes from cookiecutter-scverse v0.7.0.

Changes adopted

  • Issue templates: Use type instead of labels (GitHub's new issue type feature)
  • Actions: Update actions/checkout v4→v5, astral-sh/setup-uv v5→v7
  • CI: Remove cache-dependency-glob (v7 has smarter defaults)
  • ReadTheDocs: Python 3.12→3.13, add nodejs for KaTeX
  • Docs: Replace MathJax with KaTeX for better math rendering
  • Docs: Fix project_nameproject variable naming
  • Dependencies: Add sphinxcontrib-katex
  • Cruft: Update .cruft.json to v0.7.0

Changes skipped (kept our customizations)

  • Shell defaults: Keep bash -euo pipefail for stricter CI error handling
  • Dependency groups: Keep optional-dependencies (not dependency-groups) for user-installable extras
  • Docutils pin: Keep <0.22 for sphinx-tabs compatibility
  • Python 3.14: Defer until stable release
  • Codecov OIDC: Keep token-based auth for now

Closes #58

Changes adopted from scverse/cookiecutter-scverse v0.7.0:
- Issue templates: use 'type' instead of 'labels' (GitHub's new feature)
- Actions: checkout v4→v5, setup-uv v5→v7
- Remove cache-dependency-glob (v7 has smarter defaults)
- ReadTheDocs: Python 3.13, add nodejs for KaTeX
- Docs: Replace MathJax with KaTeX for better math rendering
- Docs: Fix project_name→project variable naming
- Add sphinxcontrib-katex dependency

Skipped changes (kept our customizations):
- Keep shell defaults for stricter CI error handling
- Keep optional-dependencies (not dependency-groups) for user extras
- Keep docutils<0.22 pin for sphinx-tabs compatibility
- Defer Python 3.14 until stable

Closes #58
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codecov bot commented Jan 16, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 85.38%. Comparing base (5f65180) to head (882807b).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main      #61   +/-   ##
=======================================
  Coverage   85.38%   85.38%           
=======================================
  Files          13       13           
  Lines        1286     1286           
=======================================
  Hits         1098     1098           
  Misses        188      188           
🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@Marius1311 Marius1311 merged commit d7d833c into main Jan 16, 2026
10 of 14 checks passed
@Marius1311 Marius1311 deleted the chore/template-update-v0.7.0 branch January 16, 2026 13:58
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