Code repo for the manuscript: "Multi-omic human neural organoid cell atlas of the posterior brain"

Repository conitaning code used for the analysis in the Azbukina, He, Lin et al., 2025.

The repository is organized into the following directories:

timecourse/ – scripts and functions for analyzing timecourse organoid atlas multiomic data
crispr_screen/ – scripts and functions for analyzing knockout organoid screen data
morphogen_screen/ – scripts and functions for analyzing morphogen screen data

@article{Azbukina2025,
  title        = {Multi-omic human neural organoid cell atlas of the posterior brain},
  author       = {Azbukina, Nadezhda and He, Zhisong and Lin, Hsiu-Chuan and Santel, Małgorzata and Kashanian, Bijan and Maynard, Ashley and Török, Tivadar and Okamoto, Ryoko and Nikolova, Marina and Kanton, Sabina and Brösamle, Valentin and Holtackers, Rene and Camp, J. Gray and Treutlein, Barbara},
  journal      = {bioRxiv},
  year         = {2025},
  doi          = {10.1101/2025.03.20.644368},
  url          = {https://www.biorxiv.org/content/10.1101/2025.03.20.644368v1},
  note         = {preprint}
}