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phenocv is a toolkits for handling preporecess and postprocess for rice high-throught phenotyping images.

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r1cheu/phenocv

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phenocv

Introduction

phenocv is a toolkits for rice high-throught phenotyping using computer vision.

phenocv is still in early development stage, and more features will be added in the future.

For label-studio semi-automatic annotation, please refer to playground.

For mmdetection training, please refer to mmdetection.

For yolo training, please refer to Ultralytics.

Support for mmdetection and label-studio will be added in the future.

Installation

Before install the package, make sure you have installed pytorch and install in the python environment with python>=3.8.

Install with pip:

pip install phenocv

Install in editable mode, allow changes to the source code to be immediately available:

git clone https://github.com/r1cheu/phenocv.git
cd phenocv
pip install -e .

Tutorial

Getting Start Open In GitHub Open In Colab

License

This project is released under the AGPL 3.0 license.

Citation

If you find this project useful in your research, please consider cite:

@misc{2023phenocv,
    title={Rice high-throught phenotyping computer vision toolkits},
    author={RuLei Chen},
    howpublished = {\url{https://github.com/r1cheu/phenocv}},
    year={2023}
}

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phenocv is a toolkits for handling preporecess and postprocess for rice high-throught phenotyping images.

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