1.1

Dramatic performance improvement and addition of new abundance calculation options.

• Up to a 30 folds speed up for Taxon KO input files. The test dense matrix of 50000 entries (1200 species) runs in 90 or 110 seconds using 24 and 16 threads respectively on a Xeon(R) CPU E5-2640 v3 @ 2.60GHz. For both tests 20G of memory were available for the JVM (-Xmx20G). Around 50 minutes were required for version 1.0.
• Addition of abundance based on ortholog Sum or Minimum
• Improvement of README
• Minor fix in command line initialization.

1.0

Omixer Reference Pathways Mapper (omixer-rpm): A tool to generate metabolic modules profiles from metagenomic samples.

• Replacement of JUnit by Spock.
• Replacement of Maven by Gradle.
• Replacement of some dependencies by built-in Java 8 Streams.
• Minor changes in the command-line.