License

This software is published under the LGPLv3 license.

Docker Container

• pipeline and datajoint ninai/pipeline
• jupyter server on top of pipeline ninai/pipeline:jupyter

Dependencies

Matlab and Python

• DataJoint
• Tolias lab commons schema

Matlab specific

• ca_source_extraction
• TIFFStack
• FastOopsi

Python specific

• c2s
• scanreader
• check requirements.txt for other libraries

Howto

Examples for specific purposes can be found HOWTO.md.

Tutorial

Tutorial IPython Notebooks are in TUTORIAL.md.