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New prep and bedding commands

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@simozacca simozacca released this 13 Jan 10:27
· 37 commits to master since this release
v0.0.5
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This release introduces two new commands to CHISEL: chisel_prep for the automatic generation of input barcoded BAM files, and chisel_bedding for generating BED files from CHISEL results. Moreover, the release introduces several minor fixes, including:

  • restructuring of source code for proper packaging
  • fix to random seeding for deterministic results
  • improve efficiency of bcftools by streaming genomic positions
  • fixes to some of the plotting functions (colormaps had error in some special cases)
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