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Nonormal CHISEL command and additional GC correction

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@simozacca simozacca released this 05 Feb 18:13
· 21 commits to master since this release
v1.1
4212b5d

The main novel features of this version v1.1 are:

  • A new nonormal CHISEL command, which allows running CHISEL without a mathed-normal sample
  • The possibility to add additional GC correction
  • A statistical test to correct clear switch errors in the given phasing
  • Improved method for clone identification
  • Additional improvements in calling of copy numbers (e.g., proper dealing with homozygous deletions)
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