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HATCHet v0.3.3

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@vineetbansal vineetbansal released this 17 Jun 19:45
· 83 commits to master since this release
v0.3.3
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Learn about vigilant mode.

This HATCHet release fixes a couple of bugs, especially when running the end-end HATCHET run command with a workflow .ini file.

  • Fixed a possible AssertionError: Samples in BBC files does not match the ones in SEG file! in the compute-cn step (had to do with the cluster-bins step failing to close the .seg/.bbc files properly.
  • A pre-downloaded SNP file specified as the genotype_snps.snps key in the .ini file would have been ignored. This is now fixed.
  • The --baseCN argument for the plot-cn step, when explicitly specified on the command line, caused an error due to incorrect typecasting. This is now fixed.
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