Skip to content

0.4.0

Choose a tag to compare

View all tags
@remydubois remydubois released this 26 Mar 11:31
· 4 commits to main since this release
0.4.0
670ca85
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

Illico can now be used as a drop-in replacement to sc.tl.rank_genes_groups:

  • Added option to return scanpy-friendly output with return_as_scanpy arg. asymptotic_wilcoxon returns either:
    • A pandas.DataFrame with columns feature, p_value, fold_change, and statistic (default), if return_as_scanpy=False
    • A dictionary containing the same keys as scanpy.tl.rank_genes_groups, if return_as_scanpy=True. Similarly as scanpy, genes are ordered by decreasing z-score.
      On a different topic:
  • Improved the batching mechanism, fixed the 'auto' mode that was excluding the very last gene in previous versions.
Assets 85
Loading