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perf: optimize classify_aa throughput (16 CPUs, vmtouch, queue pipeline) #182

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perf: optimize classify_aa throughput (16 CPUs, vmtouch, queue pipeline)

perf: optimize classify_aa throughput (16 CPUs, vmtouch, queue pipeline) #182

Triggered via push March 21, 2026 17:13
@jayhesselberthjayhesselberth
pushed c887266
main
Status Failure
Total duration 22s
Artifacts –

lint.yml

on: push
Snakemake Linting
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Python Linting
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Python Linting
YAML Linting
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2 errors and 6 warnings
YAML Linting: .github/workflows/ci.yml#L102
102:1 [empty-lines] too many blank lines (1 > 0)
Snakemake Linting
Process completed with exit code 1.
YAML Linting
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
YAML Linting: .github/workflows/lint.yml#L3
3:1 [truthy] truthy value should be one of [false, true]
YAML Linting: .github/workflows/ci.yml#L3
3:1 [truthy] truthy value should be one of [false, true]
YAML Linting: .github/workflows/docs.yml#L3
3:1 [truthy] truthy value should be one of [false, true]
Snakemake Linting
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Python Linting
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/