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seq2struct file made from correct covariance model aligned tRNAs
Lint with snakefmt #141: Commit aa957d9 pushed by jmbilodeaux
March 14, 2025 19:12 1m 43s seq2struct
March 14, 2025 19:12 1m 43s
Use snakemake action for testing
snakemake-test-action.yaml #3: Pull request #57 synchronize by jayhesselberth
March 12, 2025 20:08 50s snakemake-test-action
March 12, 2025 20:08 50s
Use snakemake action for testing
snakemake-test-action.yaml #2: Pull request #57 synchronize by jayhesselberth
March 12, 2025 20:06 55s snakemake-test-action
March 12, 2025 20:06 55s
Use snakemake action for testing
snakemake-test-action.yaml #1: Commit fdedcbf pushed by jayhesselberth
March 12, 2025 20:03 Failure snakemake-test-action
March 12, 2025 20:03 Failure
rename file
Lint with snakefmt #140: Commit 647154f pushed by jmbilodeaux
March 10, 2025 21:52 1m 43s seq2struct
March 10, 2025 21:52 1m 43s
Revert debug statements
Lint with snakefmt #139: Commit f02161e pushed by jayhesselberth
March 8, 2025 13:42 1m 42s actions-test
March 8, 2025 13:42 1m 42s
implementation still failing
Lint with snakefmt #138: Commit 8b50170 pushed by lkwhite
March 5, 2025 23:28 1m 41s Uncharged
March 5, 2025 23:28 1m 41s
failed attempt to make, run test data locally
Lint with snakefmt #137: Commit 61cd47c pushed by lkwhite
March 5, 2025 21:46 1m 49s Uncharged
March 5, 2025 21:46 1m 49s
add uncharged references (separate folder since the adapter workup is…
Lint with snakefmt #136: Commit 5a85f3b pushed by lkwhite
March 4, 2025 22:48 1m 41s Uncharged
March 4, 2025 22:48 1m 41s
skip running CCA model to call charged/uncharged on tRNA-seq data
Lint with snakefmt #135: Commit 5d36cf5 pushed by lkwhite
March 4, 2025 22:17 1m 49s Uncharged
March 4, 2025 22:17 1m 49s
test result from test.py
Lint with snakefmt #134: Commit 4629c68 pushed by jmbilodeaux
March 3, 2025 18:11 1m 42s seq2struct
March 3, 2025 18:11 1m 42s
new samples.tsv parsing
Lint with snakefmt #133: Commit 8488eb8 pushed by lkwhite
March 3, 2025 00:55 1m 44s Uncharged
March 3, 2025 00:55 1m 44s
new branch to make config for uncharged libs
Lint with snakefmt #132: Commit a655e5e pushed by lkwhite
February 28, 2025 23:25 1m 42s Uncharged
February 28, 2025 23:25 1m 42s
Make yeast mito tRNA ref
Lint with snakefmt #131: Commit d7c0cd8 pushed by jayhesselberth
February 25, 2025 19:08 1m 45s main
February 25, 2025 19:08 1m 45s
seq2structure functions and test data
Lint with snakefmt #130: Commit 8681744 pushed by jmbilodeaux
February 6, 2025 19:36 1m 40s seq2struct
February 6, 2025 19:36 1m 40s
Update config.yaml
Lint with snakefmt #129: Commit 245811b pushed by jayhesselberth
January 27, 2025 20:01 1m 36s main
January 27, 2025 20:01 1m 36s
Eliminate support of FAST5 files
Lint with snakefmt #128: Commit 20e15b0 pushed by jayhesselberth
January 22, 2025 13:21 1m 52s ditch-fast5
January 22, 2025 13:21 1m 52s
Create LICENSE
Lint with snakefmt #127: Commit a3e5a9f pushed by jayhesselberth
January 18, 2025 22:15 1m 48s main
January 18, 2025 22:15 1m 48s
Redo extraction of charging values (#46)
Lint with snakefmt #126: Commit a1e46ee pushed by jayhesselberth
January 17, 2025 21:43 1m 50s main
January 17, 2025 21:43 1m 50s
Redo extraction of charging values
Lint with snakefmt #125: Pull request #46 synchronize by jayhesselberth
January 17, 2025 21:40 1m 40s redo-charged-cpm
January 17, 2025 21:40 1m 40s
tweaks
Lint with snakefmt #124: Commit 7ce0c57 pushed by jayhesselberth
January 17, 2025 21:40 1m 48s redo-charged-cpm
January 17, 2025 21:40 1m 48s
Redo extraction of charging values
Lint with snakefmt #123: Pull request #46 synchronize by jayhesselberth
January 17, 2025 21:38 1m 42s redo-charged-cpm
January 17, 2025 21:38 1m 42s
update rule
Lint with snakefmt #122: Commit a337aa2 pushed by jayhesselberth
January 17, 2025 21:38 1m 43s redo-charged-cpm
January 17, 2025 21:38 1m 43s
Redo extraction of charging values
Lint with snakefmt #121: Pull request #46 opened by jayhesselberth
January 17, 2025 21:31 1m 41s redo-charged-cpm
January 17, 2025 21:31 1m 41s
Redo extraction of charging values
Lint with snakefmt #120: Commit 14dc534 pushed by jayhesselberth
January 17, 2025 21:08 1m 42s redo-charged-cpm
January 17, 2025 21:08 1m 42s