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fix: use absolute paths in squiggy-session.json #184

fix: use absolute paths in squiggy-session.json

fix: use absolute paths in squiggy-session.json #184

Triggered via push March 24, 2026 21:39
Status Failure
Total duration 22s
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lint.yml

on: push
Snakemake Linting
14s
Snakemake Linting
Python Linting
18s
Python Linting
YAML Linting
17s
YAML Linting
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2 errors and 6 warnings
Snakemake Linting
Process completed with exit code 1.
YAML Linting: .github/workflows/ci.yml#L102
102:1 [empty-lines] too many blank lines (1 > 0)
Snakemake Linting
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
YAML Linting
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
YAML Linting: .github/workflows/lint.yml#L3
3:1 [truthy] truthy value should be one of [false, true]
YAML Linting: .github/workflows/ci.yml#L3
3:1 [truthy] truthy value should be one of [false, true]
YAML Linting: .github/workflows/docs.yml#L3
3:1 [truthy] truthy value should be one of [false, true]
Python Linting
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/