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fix: use squeue for job status and improve logging #185

fix: use squeue for job status and improve logging

fix: use squeue for job status and improve logging #185

Triggered via push April 8, 2026 17:20
Status Failure
Total duration 27s
Artifacts

lint.yml

on: push
Snakemake Linting
22s
Snakemake Linting
Python Linting
20s
Python Linting
YAML Linting
23s
YAML Linting
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2 errors and 9 warnings
Snakemake Linting
Process completed with exit code 1.
YAML Linting: .github/workflows/ci.yml#L102
102:1 [empty-lines] too many blank lines (1 > 0)
Python Linting
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Python Linting
Failed to save: Unable to reserve cache with key pixi-linux-64-b0d1d3fbff2391ea45d0121a857213f27dadacc461563f859f974f95c778c4ec, another job may be creating this cache.
Snakemake Linting
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Snakemake Linting
Failed to save: Unable to reserve cache with key pixi-linux-64-b0d1d3fbff2391ea45d0121a857213f27dadacc461563f859f974f95c778c4ec, another job may be creating this cache.
YAML Linting
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
YAML Linting: .github/workflows/docs.yml#L3
3:1 [truthy] truthy value should be one of [false, true]
YAML Linting: .github/workflows/lint.yml#L3
3:1 [truthy] truthy value should be one of [false, true]
YAML Linting: .github/workflows/ci.yml#L3
3:1 [truthy] truthy value should be one of [false, true]
YAML Linting
Failed to save: Unable to reserve cache with key pixi-linux-64-b0d1d3fbff2391ea45d0121a857213f27dadacc461563f859f974f95c778c4ec, another job may be creating this cache.