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chore: pixi update (snakefmt 2.0.1, snakemake 9.22.0) and reformat #189

chore: pixi update (snakefmt 2.0.1, snakemake 9.22.0) and reformat

chore: pixi update (snakefmt 2.0.1, snakemake 9.22.0) and reformat #189

Triggered via push June 9, 2026 20:44
Status Success
Total duration 1m 25s
Artifacts

ci.yml

on: push
Unit Tests
31s
Unit Tests
Snakemake Syntax Check
39s
Snakemake Syntax Check
Configuration Validation
21s
Configuration Validation
Pipeline Integration Test
40s
Pipeline Integration Test
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Annotations

7 warnings
Configuration Validation
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Configuration Validation
Failed to save: Unable to reserve cache with key pixi-linux-64-47a46c6b787e0c66a25b3a52529ad88ac11bb9a27a1a60bc7c3ba42af57aace7, another job may be creating this cache.
Unit Tests
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Unit Tests
Failed to save: Unable to reserve cache with key pixi-linux-64-47a46c6b787e0c66a25b3a52529ad88ac11bb9a27a1a60bc7c3ba42af57aace7, another job may be creating this cache.
Snakemake Syntax Check
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Snakemake Syntax Check
Failed to save: Unable to reserve cache with key pixi-linux-64-47a46c6b787e0c66a25b3a52529ad88ac11bb9a27a1a60bc7c3ba42af57aace7, another job may be creating this cache.
Pipeline Integration Test
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v4. Actions will be forced to run with Node.js 24 by default starting June 16th, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/