Skip to content

build(deps): bump snakemake from 9.24.0 to 9.25.2 - #227

Merged
jayhesselberth merged 1 commit into
mainfrom
dependabot/uv/snakemake-9.25.2
Aug 26, 2026
Merged

build(deps): bump snakemake from 9.24.0 to 9.25.2#227
jayhesselberth merged 1 commit into
mainfrom
dependabot/uv/snakemake-9.25.2

Conversation

@dependabot

@dependabot dependabot Bot commented on behalf of github Aug 26, 2026

Copy link
Copy Markdown
Contributor

Bumps snakemake from 9.24.0 to 9.25.2.

Release notes

Sourced from snakemake's releases.

v9.25.2

9.25.2 (2026-08-18)

Bug Fixes

  • in scripts/wrappers using shell(), auto-infer thread count from … (#4282) (3dbad53)
  • scoped module container directive (#4184) (06656ef)
  • touch and wildcard_constraints (#4283) (500df04)

v9.25.1

9.25.1 (2026-08-04)

Bug Fixes

v9.25.0

9.25.0 (2026-08-04)

Features

  • allow first positional parameter of lookup function to be used as both query and dpath (#4263) (08d1d26)

Bug Fixes

  • revert to defaulting to pandas <3.0 as optional dependency, in order to maintain compatibility with workflows that share pandas objects between the main workflow and python scripts
Changelog

Sourced from snakemake's changelog.

9.25.2 (2026-08-18)

Bug Fixes

  • in scripts/wrappers using shell(), auto-infer thread count from … (#4282) (3dbad53)
  • scoped module container directive (#4184) (06656ef)
  • touch and wildcard_constraints (#4283) (500df04)

9.25.1 (2026-08-04)

Bug Fixes

9.25.0 (2026-08-04)

Features

  • allow first positional parameter of lookup function to be used as both query and dpath (#4263) (08d1d26)

Bug Fixes

  • revert to defaulting to pandas <3.0 as optional dependency, in order to maintain compatibility with workflows that share pandas objects between the main workflow and python scripts
Commits
  • ead894b chore(main): release 9.25.2 (#4278)
  • 500df04 fix: touch and wildcard_constraints (#4283)
  • 3dbad53 fix: in scripts/wrappers using shell(), auto-infer thread count from … (#4282)
  • 06656ef fix: scoped module container directive (#4184)
  • b9adfff chore(main): release 9.25.1 (#4270)
  • eab8d26 fix: fix f-string parsing at file end (#4269)
  • 8d994a9 chore(main): release 9.25.0 (#4265)
  • 832934c chore: comment on pandas revert
  • cbf6e96 Revert "build(deps): Release upper bound on pandas to allow v3.0+" (#4268)
  • df4d67a build(deps): bump the dependencies group across 1 directory with 4 updates (#...
  • Additional commits viewable in compare view

Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

Bumps [snakemake](https://github.com/snakemake/snakemake) from 9.24.0 to 9.25.2.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v9.24.0...v9.25.2)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-version: 9.25.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added the dependencies Dependency updates label Aug 26, 2026
@jayhesselberth
jayhesselberth merged commit 7890a95 into main Aug 26, 2026
3 checks passed
@jayhesselberth
jayhesselberth deleted the dependabot/uv/snakemake-9.25.2 branch August 26, 2026 10:33
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

dependencies Dependency updates

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant