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Releases: ropensci/mcbette

v1.14

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@richelbilderbeek richelbilderbeek released this 14 May 12:18

NEW FEATURES

  • Use GitHub Actions as a continuous integration service

MINOR IMPROVEMENTS

  • None

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v1.13

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@richelbilderbeek richelbilderbeek released this 05 Dec 13:07

NEW FEATURES

  • Add plot_marg_liks

MINOR IMPROVEMENTS

  • Add check_marg_liks

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v1.12

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@richelbilderbeek richelbilderbeek released this 11 Nov 16:30

NEW FEATURES

  • None

MINOR IMPROVEMENTS

  • Process CRAN feedback, thanks Gregor Seyer
  • Use message instead of cat/print
  • Fix URL in DESCRIPTION

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v1.11

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@richelbilderbeek richelbilderbeek released this 16 Oct 10:03

NEW FEATURES

  • None

MINOR IMPROVEMENTS

  • Depends on CRAN version of beautier (v2.4)
  • Processed feedback rOpenSci
  • Processed feedback JOSS

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v1.9

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@richelbilderbeek richelbilderbeek released this 10 Oct 07:29

NEW FEATURES

  • Transferred repository ownership to rOpenSci

MINOR IMPROVEMENTS

  • Processed feedback rOpenSci
  • Processed feedback JOSS

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v1.8.3

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@richelbilderbeek richelbilderbeek released this 24 Feb 14:16

NEW FEATURES

  • Add mcbette_self_test to self-test mcbette
  • Add mcbette_report to print all information needed for a bug report
  • Add get_mcbette_state and set_mcbette_state to store and restore
    the mcbette state. check_mcbette_state verifies if mcbette is in
    one of these three states: (1) both BEAST2 and the BEAST NS are installed,
    (2) only BEAST2 is installed (3) neither BEAST2 and the BEAST NS are
    installed

MINOR IMPROVEMENTS

  • Separated the package mcbette from a script running it.
    The latter can be found at
    https://github.com/richelbilderbeek/mcbette_run
  • Add README.Rmd, build README.md from it
  • Add AppVeyor build, even though the core feature of mcbette
    requires Linux or MacOS

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v1.8.2

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@richelbilderbeek richelbilderbeek released this 15 Jan 16:45

NEW FEATURES

  • None

MINOR IMPROVEMENTS

  • Use CRAN version of babette
  • Added can_run_mcbette as a shorthand for three if-statements
  • Added create_ns_inference_model for convenience, as it is the same
    as create_inference_model(mcmc = create_ns_mcmc(...), ...). This
    function will be moved to beautier in a future version
  • Vignette uses BEAST2 example alignment, instead of a simulated alignment
  • Prepare for rOpenSci review
  • Added more and better examples to the documentation

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v1.8

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@richelbilderbeek richelbilderbeek released this 06 Jan 08:56

NEW FEATURES

  • Follow interface of beautier v2.3

MINOR IMPROVEMENTS

  • Use CRAN versions of beautier, beastier, tracerer, mauricer
  • Processed all @lintr-bot's comments

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v1.7

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@richelbilderbeek richelbilderbeek released this 10 Sep 14:16

NEW FEATURES

  • Higher number of particles do result in a better estimation
  • Renamed est_marg_liks_from_models to est_marg_liks,
    removed the old est_marg_liks

MINOR IMPROVEMENTS

  • None

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v1.6

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@richelbilderbeek richelbilderbeek released this 27 Aug 13:01
  • Allow mcbette to run on the University of Groningen's Peregrine computer cluster