chore(sync): 🔨 synced file(s) with rostools/r3-theme

.air.toml

@@ -0,0 +1,8 @@
+[format]
+line-width = 80
+indent-width = 2
+indent-style = "space"
+line-ending = "auto"
+persistent-line-breaks = true
+exclude = []
+default-exclude = true

.github/workflows/build-website.yml

@@ -1,4 +1,4 @@
-name: Build website for R-based educational material 
+name: Build website for R-based educational material
 
 on:
   push:

.gitignore

@@ -30,4 +30,5 @@ public
 site
 slides/*.html
 _freeze
-
+*.html
+*_files

.pre-commit-config.yaml

@@ -0,0 +1,22 @@
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+ci:
+  autofix_commit_msg: "chore(pre-commit): :pencil2: automatic fixes"
+  autoupdate_commit_msg: "ci(pre-commit): :construction_worker: update pre-commit CI version"
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+
+  - repo: https://github.com/commitizen-tools/commitizen
+    rev: v4.6.1
+    hooks:
+      - id: commitizen
+
+  - repo: https://github.com/crate-ci/typos
+    rev: v1.32.0
+    hooks:
+      - id: typos

.vscode/extensions.json

@@ -0,0 +1,18 @@
+{
+  "recommendations": [
+    "Posit.air-vscode",
+    "tekumara.typos-vscode",
+    "pshaddel.conventional-branch",
+    "vivaxy.vscode-conventional-commits",
+    "EditorConfig.EditorConfig",
+    "donjayamanne.githistory",
+    "felipecaputo.git-project-manager",
+    "GitHub.vscode-pull-request-github",
+    "pshaddel.conventional-branch",
+    "quarto.quarto",
+    "github.vscode-github-actions",
+    "redhat.vscode-yaml",
+    "eamodio.gitlens"
+  ],
+  "unwantedRecommendations": []
+}

.vscode/json.code-snippets

@@ -69,16 +69,16 @@
     ],
     "description": "Insert reading task section."
   },
-  "Insert instructor note": {
+  "Insert teacher note": {
     "scope": "quarto,markdown",
-    "prefix": "instructor_note",
+    "prefix": "teacher_note",
     "body": [
       "::: {.callout-note collapse=\"true\"}",
-      "## :teacher: Instructor note",
+      "## :teacher: Teacher note",
       "",
       "${0:Text body}",
       ":::",
     ],
-    "description": "Insert instructor note that is a Quarto callout note block."
+    "description": "Insert teacher note that is a Quarto callout note block."
   }
 }

.vscode/settings.json

@@ -21,23 +21,15 @@
   ],
   "conventional-branch.format": "{Type}/{Branch}",
   "files.insertFinalNewline": true,
-  "cSpell.enabledFileTypes": {
-    "quarto": true
-  },
-  "cSpell.language": "en,en-GB",
   "conventionalCommits.scopes": [
     "preamble",
     "sessions",
     "appendix"
   ],
-  "cSpell.customDictionaries": {
-    "project-words": {
-      "name": "repo-words",
-      "path": "${workspaceRoot}/includes/dictionary.txt",
-      "description": "Words used in this repository.",
-      "addWords": true
-    },
-    "custom": true, // Enable the `custom` dictionary
-    "internal-terms": false // Disable the `internal-terms` dictionary
-  }
+  "[r]": {
+    "editor.formatOnSave": true
+  },
+  "[quarto]": {
+    "editor.formatOnSave": true
+  },
 }

CODE_OF_CONDUCT.md

@@ -1,6 +1,6 @@
 # Contributor Code of Conduct
 
-As contributors and maintainers of this project, we pledge to respect all people who 
+As contributors and maintainers of this project, we pledge to respect all people who
 contribute through reporting issues, posting suggestions, updating any material,
 submitting pull requests, and other activities.
 
@@ -13,13 +13,13 @@ imagery, derogatory comments or personal attacks, trolling, public or private ha
 insults, or other unprofessional conduct.
 
 Project maintainers have the right and responsibility to remove, edit, or reject comments,
-commits, code, wiki edits, issues, and other contributions that are not aligned to this 
-Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed 
+commits, code, wiki edits, issues, and other contributions that are not aligned to this
+Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed
 from the project team.
 
-Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by 
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by
 opening an issue or contacting one or more of the project maintainers.
 
-This Code of Conduct is adapted from the Contributor Covenant 
-(https://contributor-covenant.org), version 1.0.0, available at 
+This Code of Conduct is adapted from the Contributor Covenant
+(https://contributor-covenant.org), version 1.0.0, available at
 https://contributor-covenant.org/version/1/0/0/

CONTRIBUTING.md

@@ -3,4 +3,3 @@
 Check out the [Contributing
 Guide](https://guides.rostools.org/contributing) for more details on how
 to contribute.
-

DESCRIPTION

@@ -3,11 +3,11 @@ Type: Website
 Title: "Advanced Course for Reproducible Research in R"
 Version: 2024.12.10
 URL: https://github.com/rostools/r-cubed-advanced
-Depends: 
+Depends:
     R (>= 4.0.0),
     tidymodels,
     tidyverse
-Imports: 
+Imports:
     broom,
     cli,
     commonmark,
@@ -34,14 +34,14 @@ Imports:
     tidyr,
     workflows,
     xml2
-Suggests: 
+Suggests:
     gert,
     gitcreds,
     rmarkdown,
     tarchetypes,
     usethis
 Encoding: UTF-8
 LazyData: true
-Remotes: 
+Remotes:
     rostools/r3admin
 License: CC BY 4.0

README.md

@@ -68,7 +68,7 @@ For Linux users (and maybe Mac?), you will probably need to install
 extra dependencies:
 
 ``` bash
-sudo apt install libglpk-dev libpoppler-cpp-dev 
+sudo apt install libglpk-dev libpoppler-cpp-dev
 ```
 
 ## Contributing

_extensions/quarto-ext/fontawesome/assets/css/all.css

@@ -16,7 +16,7 @@
 .fa-regular,
 .fab,
 .fa-brands,
-.fal, 
+.fal,
 .fa-light,
 .fat,
 .fa-thin,
@@ -6694,7 +6694,7 @@ readers do not read off random characters that represent icons */
 .fa-centos:before {
   content: "\f789"; }
 
-.fa-adn:before {
+.fa-and:before {
   content: "\f170"; }
 
 .fa-cloudsmith:before {
@@ -7258,7 +7258,7 @@ readers do not read off random characters that represent icons */
 .fa-spotify:before {
   content: "\f1bc"; }
 
-.fa-optin-monster:before {
+.fa-option-monster:before {
   content: "\f23c"; }
 
 .fa-fly:before {
@@ -7968,4 +7968,3 @@ readers do not read off random characters that represent icons */
   font-display: block;
   src: url("../webfonts/FontAwesome6Free-Regular-400.woff2") format("woff2"), url("../../webfonts/FontAwesome6Free-Regular-400.ttf") format("truetype");
   unicode-range: U+F003,U+F006,U+F014,U+F016-F017,U+F01A-F01B,U+F01D,U+F022,U+F03E,U+F044,U+F046,U+F05C-F05D,U+F06E,U+F070,U+F087-F088,U+F08A,U+F094,U+F096-F097,U+F09D,U+F0A0,U+F0A2,U+F0A4-F0A7,U+F0C5,U+F0C7,U+F0E5-F0E6,U+F0EB,U+F0F6-F0F8,U+F10C,U+F114-F115,U+F118-F11A,U+F11C-F11D,U+F133,U+F147,U+F14E,U+F150-F152,U+F185-F186,U+F18E,U+F190-F192,U+F196,U+F1C1-F1C9,U+F1D9,U+F1DB,U+F1E3,U+F1EA,U+F1F7,U+F1F9,U+F20A,U+F247-F248,U+F24A,U+F24D,U+F255-F25B,U+F25D,U+F271-F274,U+F278,U+F27B,U+F28C,U+F28E,U+F29C,U+F2B5,U+F2B7,U+F2BA,U+F2BC,U+F2BE,U+F2C0-F2C1,U+F2C3,U+F2D0,U+F2D2,U+F2D4,U+F2DC; }
-

_extensions/quarto-ext/fontawesome/fontawesome.lua

@@ -44,7 +44,7 @@ return {
       group = icon
       icon = pandoc.utils.stringify(args[2])
     end
-    
+
     local title = pandoc.utils.stringify(kwargs["title"])
     if not isEmpty(title) then
       title = " title=\"" .. title  .. "\""
@@ -58,7 +58,7 @@ return {
     end
 
     local size = pandoc.utils.stringify(kwargs["size"])
-    
+
     -- detect html (excluding epub which won't handle fa)
     if quarto.doc.is_format("html:js") then
       ensureHtmlDeps()

_extensions/rostools/r3-theme/_extensions/quarto-ext/fontawesome/assets/css/all.css

@@ -6700,7 +6700,7 @@ readers do not read off random characters that represent icons */
 .fa-centos:before {
   content: "\f789"; }
 
-.fa-adn:before {
+.fa-and:before {
   content: "\f170"; }
 
 .fa-cloudsmith:before {
@@ -7291,7 +7291,7 @@ readers do not read off random characters that represent icons */
 .fa-spotify:before {
   content: "\f1bc"; }
 
-.fa-optin-monster:before {
+.fa-option-monster:before {
   content: "\f23c"; }
 
 .fa-fly:before {