Adding option to control min_area_factor
#201
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…aluation (#62) * added save_config function * added volume attribute to node * close_tracks_gaps now works for segments being a dask_array * removed node._volume method, since precomputed area already exists * added UltrackArray class to utils/array.py * ran pre-commit * added path to database as optional input parameter. If provided, the database is taken from the provided path. If not provided, the database is loaded from the path stored in config * hierarchy widget, work in progress * added non-linear slider for uniform addition of volumes' * added documentation to ultrack-array and HierarchyVizWidget * Update ultrack/widgets/ultrackwidget/ultrackwidget.py Co-authored-by: Jordão Bragantini <[email protected]> * Update ultrack/widgets/ultrackwidget/ultrackwidget.py Co-authored-by: Jordão Bragantini <[email protected]> * Update ultrack/utils/array.py Co-authored-by: Jordão Bragantini <[email protected]> * implementing Jordaos revisions * revising PR * renaming functions in ultrack-array * reverting dirty history changes * redid the changes lost in merge * added indexing test for ultrack-array * added test for hierarchy widget * Update ultrack/utils/array.py Co-authored-by: Jordão Bragantini <[email protected]> * move UltrackArray to separate file to prevent circular inputs * implemented jordaos review comments * precommit * Ultrack Array Refactoring (#107) * updating docs and typing * splitting testing * fixing widget testing * adding constant to layer name * Removing constant 5 * refactoring ultrack array to dynamics load any column * added testing to variable column attribute * updated UI and added offset * minor test and combobox changes * renaming vol to num_pix * add scale from ultrack metadata * adding caching * fixed multi time point loading * add variable node attributes on config update * added reset contrast * pickle not properly excluded from node_attributes list" " --------- Co-authored-by: Jordão Bragantini <[email protected]>
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closes #197