This is a Python library for processing par/rec MRI data. So far it is specific to the V-10 3T Philips scanner.
- Process par/rec MRI data into spin density and/or phase/velocity images.
- Access experiment parameters, check units/information, etc. I still need to finish updating the definition of the different parameters.
- Data can be exported to hdf5 (still need to test if the h5 was written correctly).
- Processed data can be plotted. For now only 2D or MS experiments.
A Linux distribution is required. For windows users we reccomend following the wiki guide on how to install a Windows Linux Subsystem.
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Create a Virtual Environment: you can use
venv
orpoetry
for example.venv
is a bit easier to use in my opinion.cd your_project_directory python3 -m venv myenv source myenv/bin/activate
Install packages within the virtual environment using
pip
. Deactivate the environment when finished:deactivate
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Integrate with Jupyter Notebook in VSCode: Install
ipykernel
and load the environment to the notebook.pip install ipykernel python -m ipykernel install --user --name=myenv --display-name "Python (myenv)”
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Install the MRIMate library
pip install git+https://collaborating.tuhh.de/v-10/private/data-evaluation/MRImate.git
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Check the quick demo notebook to learn how to use it.
Raquel - [email protected] This package was created with Cookiecutter and the fedejaure/cookiecutter-modern-pypackage project template.