Align development and master histories by rebasing development onto master - #192

Merged

cmhulbert merged 57 commits into

mergeDevelopmentRebaseOnMaster

Jan 12, 2026

Commits on Jan 12, 2026

Add N5ReadBenchmark

tpietzsch
authored and
cmhulbert
committed
WIP Compression / Codec API

tpietzsch
authored and
cmhulbert
committed
WIP encode/decode implementations

tpietzsch
authored and
cmhulbert
committed
wip

tpietzsch
authored and
cmhulbert
committed
WIP: SplittableReadData

tpietzsch
authored and
cmhulbert
committed
WIP SplittableReadData

tpietzsch
authored and
cmhulbert
committed
WIP speed up DataBlock.readData(InputStream), and clean up

tpietzsch
authored and
cmhulbert
committed
WIP DataBlock.writeData(OutputStream)

tpietzsch
authored and
cmhulbert
committed
WIP use Splittable.ReadData in DefaultBlockReader

tpietzsch
authored and
cmhulbert
committed
Clean up

tpietzsch
authored and
cmhulbert
committed
fix javadoc error

tpietzsch
authored and
cmhulbert
committed
Add explicit commons-io dependency

tpietzsch
authored and
cmhulbert
committed
Lean more on ReadData

tpietzsch
authored and
cmhulbert
committed
WIP ReadData.decode(Codec)

tpietzsch
authored and
cmhulbert
committed
Add decode(ReadData readData) variant that knows the length of the decoded data

tpietzsch
authored and
cmhulbert
committed
Hide ReadData implementations, use static ReadData factory methods instead

tpietzsch
authored and
cmhulbert
committed
Remove old Compression methods. Everything goes through ReadData

tpietzsch
authored and
cmhulbert
committed
Use OutputStream wrapper to intercept close() in EncodedReadData

tpietzsch
authored and
cmhulbert
committed
remove BytesCodec interface and put encode/decode into Compression for now

tpietzsch
authored and
cmhulbert
committed
Add LazyReadData and OutputStreamWriter

tpietzsch
authored and
cmhulbert
committed
feat/wip: add TransposeCodecInfo, DatasetCodec interface

bogovicj
authored and
cmhulbert
committed
WIP: Transpose for primitive arrays

tpietzsch
authored and
cmhulbert
committed
feat: implementation of TransposeCodec

bogovicj
authored and
cmhulbert
committed
fix/doc: TransposeCodec order parameter interpretation

bogovicj
authored and
cmhulbert
committed
refactor: return DatasetAttributes from `createDataset` method
cmhulbert
committed
fix: DefaultShardCodecInfo create

bogovicj
authored and
cmhulbert
committed
fix: ChecksumCodec implements DeterministicSizeDataCodec

bogovicj
authored and
cmhulbert
committed
feat!: rework ChecksumCodec and Crc32c codec

bogovicj
authored and
cmhulbert
committed
style: assorted cleanup and doc fixes

bogovicj
authored and
cmhulbert
committed
feat: add FloatValueParser

bogovicj
authored and
cmhulbert
committed
feat: add defaultValue to DatasetAttributes

bogovicj
authored and
cmhulbert
committed
fix!: change name of RawBlockCodecInfo to raw-bytes

bogovicj
authored and
cmhulbert
committed
fix: ChecksumCodec readChecksum

bogovicj
authored and
cmhulbert
committed
refactor: move helper methods to TransposeCodec

bogovicj
authored and
cmhulbert
committed
Move Transpose.MemCopy to separate file

tpietzsch
authored and
cmhulbert
committed
Clean up unused TransposePlayground

tpietzsch
authored and
cmhulbert
committed
Prepend DatasetCodecs to BlockCodec

tpietzsch
authored and
cmhulbert
committed
Add datasetDimensions to NestedGrid

tpietzsch
authored and
cmhulbert
committed
Add NestedPosition.maxPixelPosition()

tpietzsch
authored and
cmhulbert
committed
formatting

tpietzsch
authored and
cmhulbert
committed
Revise NestedPosition compareTo() order

tpietzsch
authored and
cmhulbert
committed
Revise buld read/writeBlocks methods

tpietzsch
authored and
cmhulbert
committed
Add DatasetAccess.read/writeShard() methods

tpietzsch
authored and
cmhulbert
committed
Examples for read/writeShard usage. To be turned into unit tests

tpietzsch
authored and
cmhulbert
committed
Add TODO comment

tpietzsch
authored and
cmhulbert
committed
ci: run actions when push/pr against development also
cmhulbert
committed
chore: license year bump
cmhulbert
committed
fix: javadoc errors
cmhulbert
committed
feat: `exists` method for PositionValueAccess
cmhulbert
committed
feat: `shardExists` API and implementation
cmhulbert
committed
test: shardExists and PVA exists tests
cmhulbert
committed
fix: TransposeCodecInfo.concatenate

bogovicj
authored and
cmhulbert
committed
test/fix: N5Writer in ShardTest tracks, does not serialize

bogovicj
authored and
cmhulbert
committed
fix: handling of null blocks by DefaultDatasetAccess

bogovicj
authored and
cmhulbert
committed
fix: do not write empty shards

bogovicj
authored and
cmhulbert
committed
fix: CodecSerialization should not use CompressionAdapter

bogovicj
authored and
cmhulbert
committed
chore: remaining cleanup from rebase onto master
cmhulbert
committed