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Lets users within the IRC use our updated notebooks and the napari plugin. - [x] notebooks - [x] plugin - [ ] export function - [ ] documentation on visualization with squidpy/spatialdata
Overdue by 3 year(s)•Due by October 7, 2022•2/2 issues closed- [x] Define a region-of-interest (ROI aka polygon) in napari Shapes layer - [x] Run pipeline on this part - [ ] Define different classes of regions - [ ] Calculate distances to these classes for every cell state - [ ] Output DataFrame of distances (cell state x polygon class)
Overdue by 3 year(s)•Due by September 30, 2022•2/2 issues closed