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• Cell shape features

  - calculate cell shape features from SquidPy - and later from SCIP (Maxim, September)

  Due by September 9, 2022
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• Output Anndata

  pipeline should do preprocessing up to and including segmentation - output AnnData and xarray Zarr ImageContainer - AnnData has genes allocated to every cell instances

  Due by August 19, 2022
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