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1. CHIP-Seq_snakemake_pipeline CHIP-Seq_snakemake_pipeline Public

   Snakemake based pipeline for CHIP-Seq data processing

   Python

2. Transcripts_based_feature_generation_pipeline Transcripts_based_feature_generation_pipeline Public

   snakemake based pipeline to generate sequnce based features for AIO-seq long read sequening data to be used in Transgene silecning classification modeling

   Python

3. sRNA_processing_pipeline_snakemake sRNA_processing_pipeline_snakemake Public

   Snakemake based pipeline for processing smallRNA sequencing libraries

   Python

4. AIO_paper AIO_paper Public

   Jupyter Notebook 2

5. synet synet Public

   Jupyter Notebook 1

6. Unique-sRNA-counting Unique-sRNA-counting Public

   Use bowtie and shortstacked mapped sRNA bam files, count number of unique sRNA counts with strand informatin

   Shell