Updated examples to support changes in Pandas and Numpy #37
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and coverage | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: build | |
| on: | |
| push: | |
| branches: [ main] | |
| pull_request: | |
| branches: [ main] | |
| schedule: | |
| - cron: '0 0 1 * *' | |
| jobs: | |
| build_wheels: | |
| name: Build wheels | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| os: [windows-latest, macOS-latest, ubuntu-latest] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python --version | |
| python -m pip install --upgrade pip | |
| pip install wheel | |
| pip install -r requirements.txt | |
| - name: Build wheel | |
| run: | | |
| python setup.py bdist_wheel | |
| ls dist/* | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pecos_${{ matrix.python-version }}_${{ matrix.os }}.whl | |
| path: dist/pecos* | |
| test_wheels: | |
| name: Test wheels | |
| needs: build_wheels | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| os: [windows-latest, macOS-latest, ubuntu-latest] | |
| fail-fast: false | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Download wheel | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: pecos_${{ matrix.python-version }}_${{ matrix.os }}.whl | |
| - name: Install pecos | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install wheel numpy pandas jinja2 matplotlib pytest | |
| pip install --no-index --pre --find-links=. pecos | |
| - name: Import pecos | |
| run: | | |
| python -c "import pecos" | |
| run_coverage: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| os: [windows-latest, macOS-latest, ubuntu-latest] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python --version | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| python -m pip install -e . | |
| - name: Run Tests | |
| run: | | |
| coverage erase | |
| coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=pecos --omit="*/tests/*" -m pytest --doctest-modules --doctest-glob="*.rst" pecos | |
| coverage run --context=${{ matrix.os }}.py${{ matrix.python-version }} --source=pecos --omit="*/tests/*" --append -m pytest --doctest-glob="*.rst" documentation | |
| env: | |
| COVERAGE_FILE: .coverage.${{ matrix.python-version }}.${{ matrix.os }} | |
| - name: Save coverage | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: .coverage.${{ matrix.python-version }}.${{ matrix.os }} | |
| path: .coverage.${{ matrix.python-version }}.${{ matrix.os }} | |
| include-hidden-files: true | |
| combine_reports: | |
| needs: [ run_coverage ] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - uses: actions/checkout@v4 | |
| - name: Install coverage | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| python -m pip install -e . | |
| pip install coveralls | |
| - name: Download coverage artifacts from test matrix | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: .coverage.*.ubuntu-latest # coverage from other OS cause problems | |
| - name: Setup coverage and combine reports | |
| run: coverage combine .coverage.*.ubuntu-latest | |
| - name: Create coverage report | |
| run: | | |
| echo "[paths]" > .coveragerc | |
| echo "source = " >> .coveragerc | |
| echo " pecos/" >> .coveragerc | |
| echo " pecos\\" >> .coveragerc | |
| echo " D:\\a\\pecos\\pecos\\pecos" >> .coveragerc | |
| echo " /home/runner/work/pecos/pecos/pecos" >> .coveragerc | |
| echo " /Users/runner/work/pecos/pecos/pecos" >> .coveragerc | |
| echo " ${{ github.workspace }}/pecos" >> .coveragerc | |
| coverage report | |
| coverage json --pretty-print | |
| coverage html --show-contexts | |
| - name: Save coverage JSON | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-json | |
| path: coverage.json | |
| - name: Save coverage html | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-html | |
| path: htmlcov | |
| - name: Push to coveralls | |
| run: coveralls --service=github --rcfile=.coveragerc | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |