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Ideas for a sanger-tol Nextflow plugin

Status: Open.

#208 In sanger-tol/nf-core-modules;

· muffato opened on Mar 17, 2026

new subworkflow: CONTACT_MAPS_INGEST_TRACKS

Status: Open.

#205 In sanger-tol/nf-core-modules;

· DLBPointon opened on Mar 12, 2026

Changes for genome_statistics

Status: Open.

#174 In sanger-tol/nf-core-modules;

· prototaxites opened on Feb 10, 2026

update module: ancestral/plot

Status: Open.

#171 In sanger-tol/nf-core-modules;

· DLBPointon opened on Feb 9, 2026

update module: ancestral/extract

Status: Open.

#170 In sanger-tol/nf-core-modules;

· DLBPointon opened on Feb 9, 2026

Software packaging for the telomere modules

Status: Open.

#163 In sanger-tol/nf-core-modules;

· muffato opened on Feb 2, 2026

[FEATURE] Allow alignment of Illumina reads in cram_align_illumina_hic with minimap2

Status: Open.

#150 In sanger-tol/nf-core-modules;

· sainsachiko opened on Jan 15, 2026

GET_KMER_COUNTS

Status: Open.

#103 In sanger-tol/nf-core-modules;

· DLBPointon opened on Oct 29, 2025

Add READ_COVERAGE to nf-core-modules

Status: Open.

#78 In sanger-tol/nf-core-modules;

· weaglesBio opened on Oct 3, 2025

New chunked mapping subworkflows

Status: Open.

#74 In sanger-tol/nf-core-modules;

· prototaxites opened on Oct 1, 2025

Module: PRETEXT/GRAPH

Status: Open.

#70 In sanger-tol/nf-core-modules;

· DLBPointon opened on Sep 30, 2025

Read coverage to bed

Status: Open.

#68 In sanger-tol/nf-core-modules;

· yumisims opened on Sep 30, 2025