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v1.0.0 – Ukrainian Ironbelly

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@priyanka-surana priyanka-surana released this 19 May 13:20
· 370 commits to main since this release
1.0.0
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Learn about vigilant mode.

Initial release of sanger-tol/readmapping pipeline, created with the nf-core template.

⚠️ Major Enhancements

  • HiC and Illumina read alignment to genome
  • PacBio CLR and CCS read alignment to genome after filtering
  • Nanopore read alignment to genome
  • Mark duplicates for HiC and Illumina alignments
  • Convert to CRAM and calculate statistics for all alignments

Dependencies

  • nextflow 22.04.0 or later
  • singularity or docker
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