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Merged
weaglesBio merged 4 commits into from
Mar 5, 2025
Merged

Update pretext version #368

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06762b7
Update pretext to 0.0.8
weaglesBio Feb 28, 2025
e6fd39a
Update pretextmap patch and changelog
weaglesBio Feb 28, 2025
7c0d781
Run prettier
weaglesBio Mar 3, 2025
5be44eb
Clear log file
weaglesBio Mar 3, 2025
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4 changes: 2 additions & 2 deletions CHANGELOG.md
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Expand Up @@ -9,14 +9,14 @@ Our 5th release for sanger-tol/treeval, correcting a software bug inside Pretext

### Enhancements & Fixes

- Correction to the PRETEXT_GRAPH module, remade pretextgraph container with newest version 0.0.7.
- Correction to the PRETEXT_GRAPH module, remade pretextgraph container with newest version 0.0.8.
- Converted shell block modules into script block modules

### Software dependencies

| Module | Old Version | New Versions |
| --------------------- | --------------- | --------------- |
| pretextmap + samtools | 0.0.2-c4 + 1.17 | 0.0.3-c1 + 1.17 |
| pretextmap + samtools | 0.0.2-c4 + 1.17 | 0.0.8-c1 + 1.17 |

## [1.2.1] - Ancient Destiny (H1)- [2025-01-22]

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2 changes: 1 addition & 1 deletion modules/local/pretext_graph.nf
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Expand Up @@ -2,7 +2,7 @@ process PRETEXT_GRAPH {
tag "$meta.id"
label 'process_single'

container "quay.io/sanger-tol/pretext:0.0.3-yy5-c1"
container "quay.io/sanger-tol/pretext:0.0.8-yy5-c1"

input:
tuple val(meta), path(pretext_file)
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2 changes: 1 addition & 1 deletion modules/nf-core/pretextmap/main.nf
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4 changes: 2 additions & 2 deletions modules/nf-core/pretextmap/pretextmap.diff
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