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v1.1.7 - Shang Tang (patch 7)

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@sainsachiko sainsachiko released this 26 Jun 15:20
· 19 commits to main since this release
1.1.7
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[1.1.7] - Shang Tang (patch 7) - [2025-06-26]

Enhancements & fixes

  • Update Deepvariant to version 1.9.0 (conda-free)
  • Add module DEEPVARIANT_VCFSTATSREPORT to generate visual report from Deepvariant
  • Compress and index concatenated VCFs

Software dependencies

Note, since the pipeline is using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference. Only Docker or Singularity containers are supported, conda is not supported.

Dependency Old version New version
Deepvariant 1.6.1 1.9.0
HTSlib 1.21

NB: Dependency has been updated if both old and new version information is present.
NB: Dependency has been added if just the new version information is present.
NB: Dependency has been removed if version information isn't present.

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