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v1.1.9-himut.1 - Zhou Jichang

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@yz533cb yz533cb released this 04 Sep 10:37
· 19 commits to main_himut since this release
1.1.9-himut.1
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[1.1.9-himut.1] - Zhou Jichang - [2025-09-03]

Enhancements & fixes

  • Add Himut module
  • DeepVariant input change from cram/crai to bam/bai

Software dependencies

Note, since the pipeline is using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference. Only Docker or Singularity containers are supported, conda is not supported.

Dependency Old version New version
Deepvariant 1.9.0 1.1.0
Himut 1.0.0

NB: Dependency has been updated if both old and new version information is present.
NB: Dependency has been added if just the new version information is present.
NB: Dependency has been removed if version information isn't present.

Parameters

This release with the following initial parameters:

Old parameter New parameter
--assembly_report

NB: Parameter has been updated if both old and new parameter information is present.
NB: Parameter has been added if just the new parameter information is present.
NB: Parameter has been removed if new parameter information isn't present.

Assets 2
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