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Updates to RunBanksy#214

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jleechung wants to merge 23 commits into
satijalab:masterfrom
jleechung:feat-chunk
Open

Updates to RunBanksy#214
jleechung wants to merge 23 commits into
satijalab:masterfrom
jleechung:feat-chunk

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@jleechung
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This PR implements:

  • a minor fix to location staggering .
  • chunking and parallelism for scalability with BiocParallel.

@cyrillustan cyrillustan self-requested a review March 6, 2026 20:19
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Running Seurat vignette took a long time, but a minimal reimplementation of the core change works.

@jleechung
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hi @cyrillustan / seurat team! we’d like to merge some improvements to the BANKSY wrapper, but it looks like the CI is currently failing during package installation because the workflow environment has Seurat 4.0.1 installed, while SeuratWrappers now requires Seurat >= 5.0.0. do you know if there’s a workaround for this? thanks!

@anashen
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anashen commented May 26, 2026

Hi @jleechung! Thank you for the PR & for the nudge. Updating the CI checks here is definitely something we need to work on but have yet to get to - we can ignore the failure at least for now.

Will review/test & get back to you on this. Thanks!

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3 participants