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allow regress out covariates for scVI intergration #220

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fentouxungui wants to merge 7 commits into
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fentouxungui:master
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allow regress out covariates for scVI intergration #220
fentouxungui wants to merge 7 commits into
satijalab:masterfrom
fentouxungui:master

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add 3 new parameters.

  1. meta.data.df: the meta.data from seurat object, default NULL, only works if any categorical.vars.to.regress or continuous.vars.to.regress is not NULL.
  2. categorical.vars.to.regress: the covariates from meta.data of seurat objec, columns should be factor type. default NULL.
  3. continuous.vars.to.regress: the covariates from meta.data of seurat objec, columns should be numeric type. default NULL.
    if you do not want to regress out any covariates, just leave all these 3 parameters default.

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