Add instructions to train contrast-agnostic model #147
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naga-karthik
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… commit also in datasplit.yml
…r subsequent dataset downloading
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Thanks for the PR! I'm getting an error when downloading the 
we might need to use these install instructions: https://github.com/spine-generic/data-multi-subject?tab=readme-ov-file#download trying with |
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Just so we don't forget 
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Co-authored-by: Jan Valosek <[email protected]>
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@valosekj thanks for the screenshot! I fixed the issue #147 (comment) in commit 4525309, can you please try running it on |
| cd contrast-agnostic-softseg-spinalcord/nnUnet | ||
| pip install -r requirements.txt | ||
| cd contrast-agnostic-softseg-spinalcord | ||
| pip install -r nnUnet/requirements.txt |
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Is it intentional that nnUnet/requirements.txt does not install the nnUNet itself?
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without nnUNet installed in the contrast_agnostic env, I obviously get:
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yes, it is intentional, I thikn nnunet installation should be done outside the contrast-agnostic repo
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This PR aims to provide instructions for training the contrast agonstic model, which can be found in the README.
How to test the PR:
nk/clean-reposcripts/train_contrast_agnostic.shResolves #145 #143 #127 #124