First prototype of processing script #4
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plbenveniste
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| # Segment MS lesions (only if it does not exist) | ||
| segment_lesion_if_does_not_exist "${file_t2}" "${file_t2_sc_seg}" | ||
| file_t2_lesion_seg="${FILELESIONSEG}" | ||
| # Compare mayo segmentations with our segmentations by adding them to the QC just after our predicted segmentation | ||
| compare_mayo_segmentation "${file_t2}" "${file_t2_sc_seg}" |
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I added these lines so that we can compare the segmentations created by our model with the segmentations manually created by the mayo clinic. This way, both segmentations will be displayed one after the other in the QC report.
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Addresses #3
To run the script, do the following: