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Releases: sct-pipeline/levin-stroke

r20250729

29 Jul 18:46
@jcohenadad jcohenadad
r20250729
658ba73

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r20250729 Latest
Latest
Participants
  • sub-001DAH
  • sub-002OEI
  • sub-003THV
  • sub-004GER
  • sub-005DBU
  • sub-006MDE
  • sub-007PGA
  • sub-008DKA
  • sub-009CMI
  • sub-010GSA
  • sub-011YMO
  • sub-012PMA
  • sub-013JME
  • sub-014TKO
  • sub-015LEA
  • sub-016MSA
  • sub-017RMA
Metrics
  • csa-GM_T2s.csv: gray matter CSA compute between C3 and C4 vertebral levels
  • csa-SC_T1w.csv: cord CSA on T1w compute between C2 and C3 vertebral levels
  • csa-SC_T2w.csv: cord CSA on T2w compute between C2 and C3 vertebral levels
  • DWI_FA_in_CST.csv: DWI Fractional Anisotropy computed in the corticospinal tract compute between C2 and C5 vertebral levels
  • DWI_FA_in_DC.csv: DWI Fractional Anisotropy computed in the dorsal column (between C2-C5)
  • DWI_FA_in_RST.csv: DWI Fractional Anisotropy computed in the reticulospinal tract (between C2-C5)
  • DWI_FA.csv: DWI Fractional Anisotropy computed in the whole white matter (between C2-C5)
  • DWI_MD*.csv: DWI Mean Diffusivity
  • DWI_RD*.csv: DWI Radial Diffusivity
  • DWI_AD*.csv: DWI Axial Diffusivity
  • MTR*.csv: Magnetization Transfer Ratio
  • MTsat.csv: Magnetization Transfer Saturation computed in the white matter
  • T1.csv: T1 computed in the white matter
Download assets
  • qc.zip: Quality control
  • log.zip: Log files of image analysis
  • results.zip: Results of the analysis

Full Changelog: r20250423...r20250729

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r20250722

22 Jul 21:10
@jcohenadad jcohenadad
r20250722
658ba73

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r20250722
Participants
  • sub-001DAH
  • sub-002OEI
  • sub-003THV
  • sub-004GER
  • sub-005DBU
  • sub-006MDE
  • sub-007PGA
  • sub-008DKA
  • sub-009CMI
  • sub-010GSA
  • sub-011YMO
  • sub-012PMA
  • sub-013JME
  • sub-014TKO
  • sub-015LEA
  • sub-016MSA
Metrics
  • csa-GM_T2s.csv: gray matter CSA compute between C3 and C4 vertebral levels
  • csa-SC_T1w.csv: cord CSA on T1w compute between C2 and C3 vertebral levels
  • csa-SC_T2w.csv: cord CSA on T2w compute between C2 and C3 vertebral levels
  • DWI_FA_in_CST.csv: DWI Fractional Anisotropy computed in the corticospinal tract compute between C2 and C5 vertebral levels
  • DWI_FA_in_DC.csv: DWI Fractional Anisotropy computed in the dorsal column (between C2-C5)
  • DWI_FA_in_RST.csv: DWI Fractional Anisotropy computed in the reticulospinal tract (between C2-C5)
  • DWI_FA.csv: DWI Fractional Anisotropy computed in the whole white matter (between C2-C5)
  • DWI_MD*.csv: DWI Mean Diffusivity
  • DWI_RD*.csv: DWI Radial Diffusivity
  • DWI_AD*.csv: DWI Axial Diffusivity
  • MTR*.csv: Magnetization Transfer Ratio
  • MTsat.csv: Magnetization Transfer Saturation computed in the white matter
  • T1.csv: T1 computed in the white matter
Download assets
  • qc.zip: Quality control
  • log.zip: Log files of image analysis
  • results.zip: Results of the analysis

Full Changelog: r20250423...r20250722

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r20250423

23 Apr 13:02
@jcohenadad jcohenadad
r20250423
47f0336

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r20250423
Participants
  • sub-001DAH
  • sub-002OEI
  • sub-003THV
  • sub-004GER
  • sub-005DBU
  • sub-006MDE
  • sub-007PGA
  • sub-008DKA
  • sub-009CMI
  • sub-010GSA
  • sub-011YMO
  • sub-012PMA
  • sub-013JME
  • sub-014TKO
Metrics
  • csa-GM_T2s.csv: gray matter CSA compute between C3 and C4 vertebral levels
  • csa-SC_T1w.csv: cord CSA on T1w compute between C2 and C3 vertebral levels
  • csa-SC_T2w.csv: cord CSA on T2w compute between C2 and C3 vertebral levels
  • DWI_FA_in_CST.csv: DWI Fractional Anisotropy computed in the corticospinal tract compute between C2 and C5 vertebral levels
  • DWI_FA_in_DC.csv: DWI Fractional Anisotropy computed in the dorsal column (between C2-C5)
  • DWI_FA_in_RST.csv: DWI Fractional Anisotropy computed in the reticulospinal tract (between C2-C5)
  • DWI_FA.csv: DWI Fractional Anisotropy computed in the whole white matter (between C2-C5)
  • DWI_MD*.csv: DWI Mean Diffusivity
  • DWI_RD*.csv: DWI Radial Diffusivity
  • DWI_AD*.csv: DWI Axial Diffusivity
  • MTR*.csv: Magnetization Transfer Ratio
  • MTsat.csv: Magnetization Transfer Saturation computed in the white matter
  • T1.csv: T1 computed in the white matter
Download assets
  • qc.zip: Quality control
  • log.zip: Log files of image analysis
  • results.zip: Results of the analysis

Full Changelog: r20240621...r20250423

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r20240621

22 Jun 02:43
@jcohenadad jcohenadad
r20240621
acc00bd

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r20240621
Participants
  • sub-001DAH
  • sub-002OEI
  • sub-003THV
  • sub-004GER
  • sub-005DBU
  • sub-006MDE
  • sub-007PGA
  • sub-008DKA
  • sub-009CMI
  • sub-010GSA
  • sub-011YMO
  • sub-012PMA
Metrics
  • csa-GM_T2s.csv: gray matter CSA compute between C3 and C4 vertebral levels
  • csa-SC_T1w.csv: cord CSA on T1w compute between C2 and C3 vertebral levels
  • csa-SC_T2w.csv: cord CSA on T2w compute between C2 and C3 vertebral levels
  • DWI_FA_in_CST.csv: DWI Fractional Anisotropy computed in the corticospinal tract compute between C2 and C5 vertebral levels
  • DWI_FA_in_DC.csv: DWI Fractional Anisotropy computed in the dorsal column (between C2-C5)
  • DWI_FA_in_RST.csv: DWI Fractional Anisotropy computed in the reticulospinal tract (between C2-C5)
  • DWI_FA.csv: DWI Fractional Anisotropy computed in the whole white matter (between C2-C5)
  • DWI_MD*.csv: DWI Mean Diffusivity
  • DWI_RD*.csv: DWI Radial Diffusivity
  • DWI_AD*.csv: DWI Axial Diffusivity
  • MTR*.csv: Magnetization Transfer Ratio
  • MTsat.csv: Magnetization Transfer Saturation computed in the white matter
  • T1.csv: T1 computed in the white matter
Download assets
  • qc.zip: Quality control
  • log.zip: Log files of image analysis
  • results.zip: Results of the analysis
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r20240317

18 Mar 02:40
@jcohenadad jcohenadad
r20240317
3b558f2

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r20240317
Participants
  • sub-001DAH
  • sub-002OEI
  • sub-003THV
  • sub-004GER
  • sub-005DBU
  • sub-006MDE
  • sub-007PGA
  • sub-008DKA
  • sub-009CMI
  • sub-010GSA
  • sub-011YMO
Metrics
  • csa-GM_T2s.csv: gray matter CSA compute between C3 and C4 vertebral levels
  • csa-SC_T1w.csv: cord CSA on T1w compute between C2 and C3 vertebral levels
  • csa-SC_T2w.csv: cord CSA on T2w compute between C2 and C3 vertebral levels
  • DWI_FA_in_CST.csv: DWI Fractional Anisotropy computed in the corticospinal tract compute between C2 and C5 vertebral levels
  • DWI_FA_in_DC.csv: DWI Fractional Anisotropy computed in the dorsal column (between C2-C5)
  • DWI_FA_in_RST.csv: DWI Fractional Anisotropy computed in the reticulospinal tract (between C2-C5)
  • DWI_FA.csv: DWI Fractional Anisotropy computed in the whole white matter (between C2-C5)
  • DWI_MD*.csv: DWI Mean Diffusivity
  • DWI_RD*.csv: DWI Radial Diffusivity
  • DWI_AD*.csv: DWI Axial Diffusivity
  • MTR*.csv: Magnetization Transfer Ratio
  • MTsat.csv: Magnetization Transfer Saturation computed in the white matter
  • T1.csv: T1 computed in the white matter
Download assets
  • qc.zip: Quality control
  • log.zip: Log files of image analysis
  • results.zip: Results of the analysis
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r20231206

06 Dec 21:46
@jcohenadad jcohenadad
r20231206
6ad0eb6
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r20231206
Participants
  • sub-001DAH
  • sub-002OEI
  • sub-003THV
  • sub-004GER
  • sub-005DBU
  • sub-006MDE
  • sub-007PGA
  • sub-008DKA
  • sub-009CMI
  • sub-010GSA
  • sub-011YMO
Metrics
  • csa-GM_T2s.csv: gray matter CSA compute between C3 and C4 vertebral levels
  • csa-SC_T1w.csv: cord CSA on T1w compute between C2 and C3 vertebral levels
  • csa-SC_T2w.csv: cord CSA on T2w compute between C2 and C3 vertebral levels
  • DWI_FA_in_CST.csv: DWI Fractional Anisotropy computed in the corticospinal tract compute between C2 and C5 vertebral levels
  • DWI_FA_in_DC.csv: DWI Fractional Anisotropy computed in the dorsal column (between C2-C5)
  • DWI_FA_in_RST.csv: DWI Fractional Anisotropy computed in the reticulospinal tract (between C2-C5)
  • DWI_FA.csv: DWI Fractional Anisotropy computed in the whole white matter (between C2-C5)
  • DWI_MD*.csv: DWI Mean Diffusivity
  • DWI_RD*.csv: DWI Radial Diffusivity
  • MTR*.csv: Magnetization Transfer Ratio
  • MTsat.csv: Magnetization Transfer Saturation computed in the white matter
  • T1.csv: T1 computed in the white matter
Download assets
  • qc.zip: Quality control
  • log.zip: Log files of image analysis
  • results.zip: Results of the analysis
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r20230419

19 Apr 13:13
@jcohenadad jcohenadad
r20230419
6ad0eb6
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
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r20230419

Quantitative results

Participants
  • sub-001DAH
  • sub-002OEI
  • sub-003THV
  • sub-004GER
  • sub-005DBU
  • sub-006MDE
  • sub-007PGA
  • sub-008DKA
  • sub-009CMI
  • sub-010GSA
Metrics
  • csa-GM_T2s.csv: gray matter CSA compute between C3 and C4 vertebral levels
  • csa-SC_T1w.csv: cord CSA on T1w compute between C2 and C3 vertebral levels
  • csa-SC_T2w.csv: cord CSA on T2w compute between C2 and C3 vertebral levels
  • DWI_FA_in_CST.csv: DWI Fractional Anisotropy computed in the corticospinal tract compute between C2 and C5 vertebral levels
  • DWI_FA_in_DC.csv: DWI Fractional Anisotropy computed in the dorsal column (between C2-C5)
  • DWI_FA_in_RST.csv: DWI Fractional Anisotropy computed in the reticulospinal tract (between C2-C5)
  • DWI_FA.csv: DWI Fractional Anisotropy computed in the whole white matter (between C2-C5)
  • DWI_MD*.csv: DWI Mean Diffusivity
  • DWI_RD*.csv: DWI Radial Diffusivity
  • MTR*.csv: Magnetization Transfer Ratio
  • MTsat.csv: Magnetization Transfer Saturation computed in the white matter
  • T1.csv: T1 computed in the white matter
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r20221005

05 Oct 18:45
@jcohenadad jcohenadad
r20221005
6ad0eb6
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r20221005

Quantitative results in seven participants:

  • csa-GM_T2s.csv: gray matter CSA compute between C3 and C4 vertebral levels
  • csa-SC_T1w.csv: cord CSA on T1w compute between C2 and C3 vertebral levels
  • csa-SC_T2w.csv: cord CSA on T2w compute between C2 and C3 vertebral levels
  • DWI_FA_in_CST.csv: DWI Fractional Anisotropy computed in the corticospinal tract compute between C2 and C5 vertebral levels
  • DWI_FA_in_DC.csv: DWI Fractional Anisotropy computed in the dorsal column (between C2-C5)
  • DWI_FA_in_RST.csv: DWI Fractional Anisotropy computed in the reticulospinal tract (between C2-C5)
  • DWI_FA.csv: DWI Fractional Anisotropy computed in the whole white matter (between C2-C5)
  • DWI_MD*.csv: DWI Mean Diffusivity
  • DWI_RD*.csv: DWI Radial Diffusivity
  • MTR*.csv: Magnetization Transfer Ratio
  • MTsat.csv: Magnetization Transfer Saturation computed in the white matter
  • T1.csv: T1 computed in the white matter
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r20211221.1

21 Dec 19:23
@alexfoias alexfoias
r20211221.1
1c2da8b
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r20211221.1

Quantitative results in four participants:

  • csa-GM_T2s.csv: gray matter CSA compute between C3 and C4 vertebral levels
  • csa-SC_T1w.csv: cord CSA on T1w compute between C2 and C3 vertebral levels
  • csa-SC_T2w.csv: cord CSA on T2w compute between C2 and C3 vertebral levels
  • DWI_FA_in_CST.csv: DWI Fractional Anisotropy computed in the corticospinal tract compute between C2 and C5 vertebral levels
  • DWI_FA_in_DC.csv: DWI Fractional Anisotropy computed in the dorsal column (between C2-C5)
  • DWI_FA_in_RST.csv: DWI Fractional Anisotropy computed in the reticulospinal tract (between C2-C5)
  • DWI_FA.csv: DWI Fractional Anisotropy computed in the whole white matter (between C2-C5)
  • DWI_MD*.csv: DWI Mean Diffusivity
  • DWI_RD*.csv: DWI Radial Diffusivity
  • MTR*.csv: Magnetization Transfer Ratio
  • MTsat.csv: Magnetization Transfer Saturation computed in the white matter
  • T1.csv: T1 computed in the white matter
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r20211221

21 Dec 15:26
@alexfoias alexfoias
r20211221
d196de8
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r20211221

Quantitative results for the four participants:

  • cord CSA on T1w
  • cord CSA on T2w (I suggest to use this one)
  • gray matter CSA
  • DWI/DTI metrics in white matter
  • MT metrics in white matter including R/L CST, dorsal column, R/L RST
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