feat: handle raw + transform API
#61
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ilan-gold
commented
Oct 13, 2025
| shuffle: bool = True, | ||
| should_denseify: bool = False, | ||
| output_format: Literal["h5ad", "zarr"] = "zarr", | ||
| transform_input_adata: Callable[[ad.AnnData], ad.AnnData] = lambda x: x, |
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@felix0097 Update this to run per-anndata object, and also add to add_to_collection
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Hopefully also addressing the rest of #52