Backend-Agnostic Refactor Using Array API Compatibility #609
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - "[0-9]+.[0-9]+.x" | |
| pull_request: | |
| env: | |
| FORCE_COLOR: "1" | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| # Cancel the job if new commits are pushed | |
| # https://stackoverflow.com/questions/66335225/how-to-cancel-previous-runs-in-the-pr-when-you-push-new-commitsupdate-the-curre | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| get-environments: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| envs: ${{ steps.get-envs.outputs.envs }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| filter: blob:none | |
| fetch-depth: 0 | |
| - uses: astral-sh/setup-uv@v5 | |
| with: | |
| enable-cache: false | |
| - id: get-envs | |
| run: | | |
| ENVS_JSON=$(NO_COLOR=1 uvx hatch env show --json | jq -c 'to_entries | |
| | map( | |
| select(.key | startswith("hatch-test")) | |
| | { name: .key, python: .value.python } | |
| )') | |
| echo "envs=${ENVS_JSON}" | tee $GITHUB_OUTPUT | |
| test: | |
| needs: get-environments | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| env: ${{ fromJSON(needs.get-environments.outputs.envs) }} | |
| env: # environment variable for use in codecov’s env_vars tagging | |
| ENV_NAME: ${{ matrix.env.name }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| filter: blob:none | |
| - name: Set up Python ${{ matrix.env.python }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.env.python }} | |
| - name: Install UV | |
| uses: astral-sh/setup-uv@v5 | |
| with: | |
| enable-cache: true | |
| cache-dependency-glob: pyproject.toml | |
| - name: Install dependencies | |
| run: uvx hatch -v env create ${{ matrix.env.name }} | |
| - name: Run tests | |
| run: uvx hatch run ${{ matrix.env.name }}:run-cov -v --color=yes -n auto --cov --cov-report=xml --junitxml=test-data/test-results.xml | |
| - name: Upload coverage data | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| env_vars: ENV_NAME | |
| fail_ci_if_error: true | |
| files: test-data/coverage.xml | |
| build: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| filter: blob:none | |
| - name: Set up Python 3.13 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.13' | |
| - name: Install build tools and requirements | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install build twine | |
| - name: Display installed versions | |
| run: pip list | |
| - name: Build & Twine check | |
| run: | | |
| python -m build --sdist --wheel . | |
| twine check dist/* | |
| - name: Check runtime version | |
| run: | | |
| pip install dist/*.whl | |
| python -c 'import anndata; print(anndata.__version__)' | |
| check: | |
| if: always() | |
| needs: | |
| - get-environments | |
| - test | |
| - build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: re-actors/alls-green@release/v1 | |
| with: | |
| jobs: ${{ toJSON(needs) }} |