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Fix CI runners#457

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rcannood merged 6 commits into
develfrom
fix-macos-build
May 12, 2026
Merged

Fix CI runners#457
rcannood merged 6 commits into
develfrom
fix-macos-build

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@rcannood
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Description

Checklist

Before review

  • Update and regenerate man pages
  • Add/update tests
  • Add/update examples in vignettes
  • Pass CI checks

Before merge

  • Update NEWS
  • Bump devel version

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github-actions Bot commented May 12, 2026

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Branchfix-macos-build
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@Artur-man
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Artur-man commented May 12, 2026

There is an hardcoding of bioc version here, which failed my checks.

install.packages(c("BiocManager", "remotes"), quiet = TRUE)
## update=FALSE avoids calling old.packages(type="both") which
## triggers the R-devel bug in .available.both() (commit dd03406)
BiocManager::install(version = "3.23", ask = FALSE, update = FALSE)
cat("R_BIOC_VERSION=3.23\n", file = Sys.getenv("GITHUB_ENV"), append = TRUE)

@rcannood
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There's also a version map in bioc-actions which needs to be updated (see grimbough/bioc-actions#20)

@rcannood
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Let's hope grimbough/bioc-actions#21 gets merged! I'll already merge this PR and fix the bioc install step when grimbough/bioc-actions#20 or grimbough/bioc-actions#21 is merged.

@rcannood rcannood merged commit 096e75a into devel May 12, 2026
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2 participants