Updated the rankby_obsm function to optionally accept keys to test as… #121
Workflow file for this run
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| name: Test | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| schedule: | |
| - cron: "0 5 1,15 * *" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| # to fail on error in multiline statements (-e), in pipes (-o pipefail), and on unset variables (-u). | |
| shell: bash -euo pipefail {0} | |
| jobs: | |
| # Get the test environment from hatch as defined in pyproject.toml. | |
| # This ensures that the pyproject.toml is the single point of truth for test definitions and the same tests are | |
| # run locally and on continuous integration. | |
| # Check [[tool.hatch.envs.hatch-test.matrix]] in pyproject.toml and https://hatch.pypa.io/latest/environment/ for | |
| # more details. | |
| get-environments: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| envs: ${{ steps.get-envs.outputs.envs }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| filter: blob:none | |
| fetch-depth: 0 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v5 | |
| - name: Get test environments | |
| id: get-envs | |
| run: | | |
| ENVS_JSON=$(uvx hatch env show --json | jq -c 'to_entries | |
| | map( | |
| select(.key | startswith("hatch-test")) | |
| | { | |
| name: .key, | |
| label: (if (.key | contains("pre")) then .key + " (PRE-RELEASE DEPENDENCIES)" else .key end), | |
| python: .value.python | sub("3[.]13"; "3.13.3"), # https://github.com/numba/numba/issues/10101 | |
| } | |
| )') | |
| echo "envs=${ENVS_JSON}" | tee $GITHUB_OUTPUT | |
| # Run tests through hatch. Spawns a separate runner for each environment defined in the hatch matrix obtained above. | |
| test: | |
| needs: get-environments | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| env: ${{ fromJSON(needs.get-environments.outputs.envs) }} | |
| name: ${{ matrix.env.label }} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| filter: blob:none | |
| fetch-depth: 0 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v5 | |
| with: | |
| python-version: ${{ matrix.env.python }} | |
| cache-dependency-glob: pyproject.toml | |
| - name: create hatch environment | |
| run: uvx hatch env create ${{ matrix.env.name }} | |
| - name: run tests using hatch | |
| env: | |
| MPLBACKEND: agg | |
| PLATFORM: ${{ matrix.os }} | |
| DISPLAY: :42 | |
| run: uvx hatch run ${{ matrix.env.name }}:run-cov | |
| - name: generate coverage report | |
| run: uvx hatch run ${{ matrix.env.name }}:coverage xml | |
| - name: Upload coverage | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # Check that all tests defined above pass. This makes it easy to set a single "required" test in branch | |
| # protection instead of having to update it frequently. See https://github.com/re-actors/alls-green#why. | |
| check: | |
| name: Tests pass in all hatch environments | |
| if: always() | |
| needs: | |
| - get-environments | |
| - test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: re-actors/alls-green@release/v1 | |
| with: | |
| jobs: ${{ toJSON(needs) }} |