v2.1.1

2.1.1

Added

• mypy checks in CI
• notebook checks in CI

Bugfixes

• Fixed error in decoupler.pp.pseudobulk when adata.obs_names were not unique, now throws verbose error
• Fixed corner case in decoupler.mt.gsea when p-values were infitite and could not be corrected

v2.1.0

Changes

• Updated logo
• decoupler._download._download now returns bytes instead of a dataframe. To transform to pandas.DataFrame use decoupler._download._bytes_to_pandas
• Enrichment methods and pseudobulking now work with backed AnnData objects, useful when working with big datasets and memory is limited

Bugfixes

• Fixed error in pl.obsm where default value of cmap_obs was not properly set.

v2.0.7

Added pre-commit

v2.0.6

Modified links and paths to follow scverse repo

v2.0.5

Fixed error message when extra dependencies where not installed.

v2.0.4

Fixed dcor import bug as an external dependency

v2.0.3

Bugfix for pp.pseudobulk when obs columns were not categorical.

v2.0.2

Small patch with the following bug fixes:

• Added ipywidgets as dependency
• Silenced xgboost warnings
• Handled corner case in bm.metric.auc when scores are all 0
• Fixed error in bm.metric.hmean when metrics were str instead of list
• Fixed error when obs col is list in dc.pp.pseudobulk
• Allowed ordering functions (dc.pp.bin_order, dc.pl.order and dc.pl.order_targets) not to be bound between 0 and 1

v2.0.1

Small patch to fix an error in decoupler.pp.pseudobulk when handling empty samples or features

v2.0.0

Major refactor to follow the scverse template.