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@joschif joschif commented Jul 10, 2025

Checklist for adding packages

Mandatory

Name of the tool: delnx

Short description: Differential expression analysis in python

How does the package use scverse data structures (please describe in a few sentences):

  • All user-facing functions use AnnData objects as input
  • Some modify AnnData objects in-place as is common for scverse packages
  • The code is publicly available under an OSI-approved license (MIT)
  • The package provides versioned releases (current 0.2.3)
  • The package can be installed from a standard registry (e.g. PyPI, conda-forge, bioconda) (PyPi)
  • Automated tests cover essential functions of the package and a reasonable range of inputs and conditions 1
  • Continuous integration (CI) automatically executes these tests on each push or pull request 2
  • The package provides API documentation via a website or README3 (https://delnx.readthedocs.io/en/latest/)
  • The package uses scverse datastructures where appropriate (i.e. AnnData, MuData or SpatialData and their modality-specific extensions)
  • I am an author or maintainer of the tool and agree on listing the package on the scverse website

Recommended

  • Please announce this package on scverse communication channels (zulip, discourse, twitter) (-> not yet, but will do)
  • Please tag the author(s) these announcements. Handles (e.g. @scverse_team) to include are:

Zulip: Jonas (936508)
Discourse:
Mastodon:
Bluesky: @josch1.bsky.social
Twitter: @josch_f, @LukasAd85691603

@mikkelnrasmussen mikkelnrasmussen self-assigned this Aug 7, 2025
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@mikkelnrasmussen mikkelnrasmussen left a comment

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Hi @joschif,

Thanks for submitting delnx! Super cool package and the documentation, tutorials and test coverage looks great! Everything looks good to me.

Best,
Mikkel

@mikkelnrasmussen mikkelnrasmussen removed their assignment Aug 7, 2025
@mikkelnrasmussen mikkelnrasmussen merged commit c6480db into scverse:main Aug 7, 2025
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2 participants