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e171b2b
Add category as field to all packages
grst Oct 30, 2025
a22aed6
Add core packages
grst Oct 30, 2025
481f37d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 30, 2025
6aae7ae
Update schema
grst Nov 8, 2025
57654d7
Fix corrupted github/pypi identifiers
grst Nov 8, 2025
d2ab12b
Add schema version
grst Nov 8, 2025
f232c43
Update gh actions
grst Nov 8, 2025
a188a5b
Add github token
grst Nov 8, 2025
2e8e588
Apply suggestions from code review
grst Nov 10, 2025
cb04ac3
Remove website from package registry
grst Nov 10, 2025
e3110cd
Add grst to authors; format pyproject.toml
grst Nov 10, 2025
5bf6ac6
fix schema
flying-sheep Nov 11, 2025
100cfcc
Batch users a bit
flying-sheep Nov 11, 2025
c5ccf5b
Merge branch 'main' into img-support
flying-sheep Nov 11, 2025
196c70d
remove orgs from contacts
flying-sheep Nov 11, 2025
c3e3b22
Do not fail fast
grst Nov 15, 2025
ea2e69a
Fix logging
grst Nov 15, 2025
dd745ca
Merge branch 'main' into img-support
grst Nov 15, 2025
ce8f2e5
Merge branch 'img-support' into add-package-category
grst Nov 16, 2025
492b76d
Update packages/anndata/meta.yaml
grst Nov 16, 2025
b610b96
Update packages/anndata/meta.yaml
grst Nov 16, 2025
66c65dc
Merge branch 'img-support' into add-package-category
grst Nov 16, 2025
b66b2ba
Add logos and update point of contact
grst Nov 16, 2025
58510c2
Snapatac
grst Nov 16, 2025
58ed86f
Add muon conda-forge identifier
grst Nov 16, 2025
f2e4315
Add missing info
grst Nov 16, 2025
b306cd3
Merge branch 'main' into add-package-category
grst Nov 18, 2025
e5471c3
nicer log
flying-sheep Nov 18, 2025
816e1ea
Fix tutorial links
flying-sheep Nov 18, 2025
3aaa81d
Merge branch 'main' into add-package-category
flying-sheep Nov 19, 2025
79999fc
Merge branch 'main' into add-package-category
flying-sheep Nov 20, 2025
99b5c39
fix category
flying-sheep Nov 20, 2025
18ecfbe
Merge branch 'main' into add-package-category
flying-sheep Nov 20, 2025
dabaa9c
Add scvi-tools citations
grst Nov 20, 2025
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40 changes: 40 additions & 0 deletions packages/SnapATAC2/logo.svg
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24 changes: 24 additions & 0 deletions packages/SnapATAC2/meta.yaml
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name: SnapATAC2
description: |
SnapATAC2 is a scalable and modular pipeline for analyzing single-cell ATAC-seq data,
enabling efficient preprocessing, dimensionality reduction, clustering, and integration
with single-cell RNA-seq.
project_home: https://github.com/scverse/SnapATAC2
documentation_home: https://scverse.org/SnapATAC2/
tutorials_home: https://scverse.org/SnapATAC2/tutorials/index.html
publications:
- 10.1038/s41592-023-02139-9
install:
pypi: snapatac2
conda: bioconda::snapatac2
tags:
- ATAC-seq
- chromatin accessibility
- epigenomics
license: MIT
version: 2.5.0
contact:
- kaizhang
logo: logo.svg
test_command: pip install ".[test]" && pytest
category: core-framework
1 change: 1 addition & 0 deletions packages/anndata/logo.svg
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24 changes: 24 additions & 0 deletions packages/anndata/meta.yaml
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name: AnnData
description: |
anndata is a Python package for handling annotated data matrices in memory and on disk,
positioned between pandas and xarray. anndata offers a broad range of computationally
efficient features including, among others, sparse data support, lazy operations, and GPU support.
project_home: https://github.com/scverse/anndata
documentation_home: https://anndata.readthedocs.io/en/latest/
tutorials_home: https://anndata.readthedocs.io/en/latest/tutorials/index.html
publications:
- 10.1101/2021.12.16.473007
install:
pypi: anndata
conda: conda-forge::anndata
tags:
- data structure
- annotated data
- sparse data
license: BSD-3-Clause
version: 0.12.4
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contact:
- flying-sheep
- ilan-gold
logo: logo.svg
category: core-datastructure
65 changes: 65 additions & 0 deletions packages/decoupler/logo.svg
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24 changes: 24 additions & 0 deletions packages/decoupler/meta.yaml
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name: decoupler
description: |
decoupler is a framework containing different enrichment statistical methods to extract
biologically driven scores from omics data within a unified framework.
project_home: https://github.com/scverse/decoupler
documentation_home: https://decoupler.readthedocs.io/en/latest/
tutorials_home: https://decoupler.readthedocs.io/en/latest/notebooks/index.html
publications:
- 10.1093/bioadv/vbac016
install:
pypi: decoupler
conda: conda-forge::decoupler-py
tags:
- enrichment analysis
- pathway analysis
- gene sets
- functional annotation
license: BSD-3-Clause
version: 2.1.1
contact:
- PauBadiaM
logo: logo.svg
test_command: pip install ".[test]" && pytest
category: core-framework
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