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Add core packages #292
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e171b2b
Add category as field to all packages
grst a22aed6
Add core packages
grst 481f37d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] 6aae7ae
Update schema
grst 57654d7
Fix corrupted github/pypi identifiers
grst d2ab12b
Add schema version
grst f232c43
Update gh actions
grst a188a5b
Add github token
grst 2e8e588
Apply suggestions from code review
grst cb04ac3
Remove website from package registry
grst e3110cd
Add grst to authors; format pyproject.toml
grst 5bf6ac6
fix schema
flying-sheep 100cfcc
Batch users a bit
flying-sheep c5ccf5b
Merge branch 'main' into img-support
flying-sheep 196c70d
remove orgs from contacts
flying-sheep c3e3b22
Do not fail fast
grst ea2e69a
Fix logging
grst dd745ca
Merge branch 'main' into img-support
grst ce8f2e5
Merge branch 'img-support' into add-package-category
grst 492b76d
Update packages/anndata/meta.yaml
grst b610b96
Update packages/anndata/meta.yaml
grst 66c65dc
Merge branch 'img-support' into add-package-category
grst b66b2ba
Add logos and update point of contact
grst 58510c2
Snapatac
grst 58ed86f
Add muon conda-forge identifier
grst f2e4315
Add missing info
grst b306cd3
Merge branch 'main' into add-package-category
grst e5471c3
nicer log
flying-sheep 816e1ea
Fix tutorial links
flying-sheep 3aaa81d
Merge branch 'main' into add-package-category
flying-sheep 79999fc
Merge branch 'main' into add-package-category
flying-sheep 99b5c39
fix category
flying-sheep 18ecfbe
Merge branch 'main' into add-package-category
flying-sheep dabaa9c
Add scvi-tools citations
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| name: SnapATAC2 | ||
| description: | | ||
| SnapATAC2 is a scalable and modular pipeline for analyzing single-cell ATAC-seq data, | ||
| enabling efficient preprocessing, dimensionality reduction, clustering, and integration | ||
| with single-cell RNA-seq. | ||
| project_home: https://github.com/scverse/SnapATAC2 | ||
| documentation_home: https://scverse.org/SnapATAC2/ | ||
| tutorials_home: https://scverse.org/SnapATAC2/tutorials/index.html | ||
| publications: | ||
| - 10.1038/s41592-023-02139-9 | ||
| install: | ||
| pypi: snapatac2 | ||
| conda: bioconda::snapatac2 | ||
| tags: | ||
| - ATAC-seq | ||
| - chromatin accessibility | ||
| - epigenomics | ||
| license: MIT | ||
| version: 2.5.0 | ||
| contact: | ||
| - kaizhang | ||
| logo: logo.svg | ||
| test_command: pip install ".[test]" && pytest | ||
| category: core-framework |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| name: AnnData | ||
| description: | | ||
| anndata is a Python package for handling annotated data matrices in memory and on disk, | ||
| positioned between pandas and xarray. anndata offers a broad range of computationally | ||
| efficient features including, among others, sparse data support, lazy operations, and GPU support. | ||
| project_home: https://github.com/scverse/anndata | ||
| documentation_home: https://anndata.readthedocs.io/en/latest/ | ||
| tutorials_home: https://anndata.readthedocs.io/en/latest/tutorials/index.html | ||
| publications: | ||
| - 10.1101/2021.12.16.473007 | ||
| install: | ||
| pypi: anndata | ||
| conda: conda-forge::anndata | ||
| tags: | ||
| - data structure | ||
| - annotated data | ||
| - sparse data | ||
| license: BSD-3-Clause | ||
| version: 0.12.4 | ||
| contact: | ||
| - flying-sheep | ||
| - ilan-gold | ||
| logo: logo.svg | ||
| category: core-datastructure | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| name: decoupler | ||
| description: | | ||
| decoupler is a framework containing different enrichment statistical methods to extract | ||
| biologically driven scores from omics data within a unified framework. | ||
| project_home: https://github.com/scverse/decoupler | ||
| documentation_home: https://decoupler.readthedocs.io/en/latest/ | ||
| tutorials_home: https://decoupler.readthedocs.io/en/latest/notebooks/index.html | ||
| publications: | ||
| - 10.1093/bioadv/vbac016 | ||
| install: | ||
| pypi: decoupler | ||
| conda: conda-forge::decoupler-py | ||
| tags: | ||
| - enrichment analysis | ||
| - pathway analysis | ||
| - gene sets | ||
| - functional annotation | ||
| license: BSD-3-Clause | ||
| version: 2.1.1 | ||
| contact: | ||
| - PauBadiaM | ||
| logo: logo.svg | ||
| test_command: pip install ".[test]" && pytest | ||
| category: core-framework |
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