Update template to v0.5.0

[scverse-bot]

cookiecutter-scverse released v0.5.0.

Changes

New template sync

We re-implemented template sync from scratch instead on relying on cruft. This allows us to create real merge conflicts that show up as such on GitHub instead of .rej files.

• Generate real merge conflicts on template update by @grst in Generate real merge conflicts on template update cookiecutter-scverse#364

Enhancements

We committed to using hatch as project and environment manager. By doing so, we simplified the
GitHub actions:

• Hatch envs by @flying-sheep in Hatch envs cookiecutter-scverse#308
• Upgrade Github actions by @Zethson in Upgrade Github actions cookiecutter-scverse#324
• Use hatch in github actions by @grst in Use hatch in github actions cookiecutter-scverse#373

We switched the pre-commit hook from prettier to biome and added a pre-commit hook for autoformatting pyproject.toml files:

• Switch from prettier to Biome by @flying-sheep in Switch from prettier to Biome cookiecutter-scverse#304
• TOML formatting using pyproject-fmt by @flying-sheep in TOML formatting using pyproject-fmt cookiecutter-scverse#299

We added (optional) integration with VScode and improved cookiecutter prompts:

• Add VS Code integration by @flying-sheep in Add VS Code integration cookiecutter-scverse#312
• Add prompts for most variables by @flying-sheep in Add prompts for most variables cookiecutter-scverse#319

We removed bump2version as recommended way to update versions. Instead, just update the version manually in pyproject.toml or use hatch-vcs

• Remove bump2version by @Zethson in Remove bump2version cookiecutter-scverse#367

Fixes

• Fix PyPI link in README by @grst in Fix PyPI link in README cookiecutter-scverse#286
• Fix autosummary template by @flying-sheep in Fix autosummary template cookiecutter-scverse#297
• Fix string syntax in hook output by @flying-sheep in Fix string syntax in hook output cookiecutter-scverse#305
• Fix repo metadata by @flying-sheep in Fix repo metadata cookiecutter-scverse#307
• Fix links by @flying-sheep in Fix links cookiecutter-scverse#309
• Update post-gen output for hatch by @flying-sheep in Update post-gen output for hatch cookiecutter-scverse#311
• Fix README links by @flying-sheep in Fix README links cookiecutter-scverse#321
• Hatch extra-features doesn’t exist by @flying-sheep in Hatch extra-features doesn’t exist cookiecutter-scverse#326
• Update / fix README template by @le-ander in Update / fix README template cookiecutter-scverse#356
• Exclude .cruft.json from biome hook by @grst in Exclude .cruft.json from biome hook cookiecutter-scverse#362
• Switch to session-info2 by @Zethson in Switch to session-info2 cookiecutter-scverse#366
• Use cruft in github action that creates instance repo by @grst in Use cruft in github action that creates instance repo cookiecutter-scverse#371
• Even more precautionary bash settings by @grst in Even more precautionary bash settings cookiecutter-scverse#377

Documentation

• Add instructions on how to migrate an existing project to using the template by @grst in Add instructions on how to migrate an existing project to using the template cookiecutter-scverse#289
• fix hatch snippets for docs build in contributing.md by @eroell in fix hatch snippets for docs build in contributing.md cookiecutter-scverse#328
• Add instructions for a pending publisher by @flying-sheep in Add instructions for a pending publisher cookiecutter-scverse#358
• Add Github Actions documentation and simplify template usage by @Zethson in Add Github Actions documentation and simplify template usage cookiecutter-scverse#369
• Add more elaborate example by @Zethson in Add more elaborate example cookiecutter-scverse#365
• Suggest to use uv to run cruft by @grst in Suggest to use uv to run cruft cookiecutter-scverse#370

Chore

• Remove test reliance on unmaintained pytest-git by @flying-sheep in Remove test reliance on unmaintained pytest-git cookiecutter-scverse#298
• pre-commit updates

New Contributors

• @eroell made their first contribution in fix hatch snippets for docs build in contributing.md cookiecutter-scverse#328
• @le-ander made their first contribution in Update / fix README template cookiecutter-scverse#356
• @scverse-bot made their first contribution in Use cruft in github action that creates instance repo cookiecutter-scverse#371

Full Changelog: scverse/cookiecutter-scverse@v0.4.0...v0.5.0

Additional remarks

• unsubscribe: If you don’t want to receive these PRs in the future,
  add skip: true to template-repos.yml using a PR or,
  if you never want to sync from the template again, delete the .cruft.json file in the root of your repository.
• If there are merge conflicts, you need to resolve them manually.
• The scverse template works best when the pre-commit.ci, readthedocs and codecov services are enabled.
  Make sure to activate those apps if you haven't already.

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